Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1164 ATGGGCAAGGGTTATAAATACGAAAGGAAGAAAGCAAGTTCTATTTCTTCTTCATCAATATCATTCAGAACTCAGAAAGATATACTTACAGAGAAGAAAATGTCTGGGTTTGGACCTGTTACACAAGATTGGGAGAACGTGGTGATGCGGAAAAAGGCACCAACAGCTGCGGCCAAGAAAGATGAGAAAGCTGTGAACGCCGCTCGTCGCGCTGGCGCCGATATTGAAACCCTAAAAAAATTTAATGCTGCGACAAATAAAGCAGCCTCCAGCAGCACTTCTTTAAACACAAAAAAGCTTGATGATGAAACTGAGAATCTTCATCATGAGCGGGTACCAACTGAACTAAAGAAGGCCATCATGCAGGCTAGGATGGAGAAAAAGCTTACTCAGGCTCAACTAGCTCAGATAATAAATGAGAAGCCTCAAGTGATTCAGGAATATGAATCAGGTAAAGCCATTCCAAATCAACAAATATTAGGTAAACTGGAGAGAGCCCTTGGTGCAAAACTGCGTGGAAAGAAATGA 528 0.4186 MGKGYKYERKKASSISSSSISFRTQKDILTEKKMSGFGPVTQDWENVVMRKKAPTAAAKKDEKAVNAARRAGADIETLKKFNAATNKAASSSTSLNTKKLDDETENLHHERVPTELKKAIMQARMEKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQILGKLERALGAKLRGKK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1164 175 SMART mbf_short4 119 174 IPR001387 -
Acco08g1164 175 Pfam Multiprotein bridging factor 1 42 112 IPR013729 -
Acco08g1164 175 MobiDBLite consensus disorder prediction 1 20 - -
Acco08g1164 175 ProSiteProfiles Cro/C1-type HTH domain profile. 120 174 IPR001387 -
Acco08g1164 175 Gene3D - 104 175 IPR010982 GO:0003677
Acco08g1164 175 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 41 175 - -
Acco08g1164 175 SUPERFAMILY lambda repressor-like DNA-binding domains 114 171 IPR010982 GO:0003677
Acco08g1164 175 Coils Coil 120 140 - -
Acco08g1164 175 FunFam Multiprotein bridging factor 1 104 175 - -
Acco08g1164 175 Pfam Helix-turn-helix 120 170 IPR001387 -
Acco08g1164 175 CDD HTH_XRE 118 168 IPR001387 -
Acco08g1164 175 MobiDBLite consensus disorder prediction 86 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1164 Acco-ChrAcco08 12008311 12012046 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Acco08g1164 MBF1 8.1e-23 No_clan