Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1138 ATGTCGCATTCTGGGAAGCCCATTTCCGAGATAGGACTCGATGCTCTCAACCATCGATTCCACGACTCTTTCAGCTGTGAGGCTAACAAGCCGGATTTTCGAGAACTCGACTTGGGCTCGCCGGTTTCGCCTTTGCGGACTCGTCACAGTGTACCTACTGCTAGTGCCAGTGGACTCACTACTACCAGTAGTAGTTCGAGTTCATCTGGATCGGTCTCTGGAAGAAACGGGTACAAACTGGTCACGAAACGATCTGATTACGATCCGAATAACCACTCTGGCGAACTCTCCGGCTCCGGCGAGAACAGTCCGACCGCCGCAGGGAATGCCAGGAACTTCAAATCGCCTCAAGCAAGAGCGGATTCCAAATCCACCCAACCGTTGATTTACTCAGGCCAAAGCTCCTCCGTGAATTCACCGCCGCCAAATTTTCTTCCCACAGGCAATATCTGTCCGTCCGGAAAGATTCTAAAGACCGCTGCCGTCGCCAGTCGGAGCTCCAGGACTGACGTTTTGGGTTCTGGGATAGGATATTACGGCCATGGAAGCATAATGCGGGGCGGTGCGACTTCCAAAGGCAATGCTGGAGGAACGACCGGCGCGGCCAACACGAGGGCGAGTGGCGGTGGCTCCGTCACCGAGTCAGTGAAGCGAGCCGCGGTGAGTGTGGATCCGGAAGACGTGAAGAGAGCAGGGAACGAGCAGTACAAGAGGGGTCACTTCACAGAGGCTTTGAATCTATACGATCGAGCGATTGCTTTATCCCCTGCTAACGCAGCCTACCGGAGCAACCGTGCAGCTGCATTGACGGGTTTGGGACGGTTGGCTGAGGCTGTGAGGGAGTGTGAGGAGGCTGTGAGGTTAGATCCCAATTATGGGAGGGCACATCAGCGTTTGGCTTCTCTTTTTCTAAGGTTAGGACAAGTTGAGAATGCCAGGAAACATCTCTTCTGCCCTGGGCTGCCACCTGATCCTTCTGAGTTGCAGAAATTGCAACTAGTGGAGAAGCATTTCGGGAAATGTACAGATTCCCGGAAGATAGGTGATTGGAAAAGTGTGCTCAGGGAAATTGATGCAGCTGTTTCTTCTGGAGCAGACTCTTGTCCCGAGCTCTTATTGTGTAGAGCAGAAGCCCTTTTGAAACTCCATCAAGTTGATGATGCGGAATCAAGTCTGTTAAACAACCCCAAATTAGAACCATATACTAACTCCTCTTCACAGGCAAGATTTTTTGGGTTCCTATCTGATGCTTATTCTTTCTTTGTGAAAGCTCAGATTGAGATGGCTCTGGGAAGATTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGTCAGATTGATCCCCGAAACATTGAGGTTACTGTTTTGCTTAAAAATGTAAGGATGGTGGCGAGAGCTCGAGCTCATGGCAACGATCTTTTCAAATCTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGGATGGATCCTTCAAACTCGGTTCTCTACTGCAATAGAGCAGCTTGCTGGTTTAAGCTTGGGCACTGGGAACAATCAATTGAGGATTGCAATCAAGCTTTACATTTCCAACCTAATTACTCAAAAGCTCTTCTTCGAAGGGCTGCATCTAATAGCAAGTTAGAAAGGTGGGCGGTAGCTGTCAAAGATTATGAGATCTTGCGTAGGGATCTTCCAGATGACAGTGAAGTGGCTGAAGCTCTGTTTCATGCAATATTGGCATTAAAGAAATCTCGTGGAGAGGAAGTGCATGATTTGAAATTTGGTGGTGAGGTGGAAGAAATATCAGGTCTTGAGCAATTTAGAGCAGCTATAGCATTACCAGGTGTTTCTGTGGTTCATTTTGAAATTGCATCTAACCCACAATGCAAGCAAATCTCACCGTTTATGGGTACATTATGTGGCCGCTATCCTTCCATTAACTTCCTCAAGGTGGATATTCAAGATTGCCCAATGGTTGCAACTGCTGAGAGCATTAGAATCGTACCAACATTCAAGATCTACAAGAATGGCTGTCGTGTGAAGGAAATCGTGTGTCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTATAGCTTTTAA 2094 0.4823 MSHSGKPISEIGLDALNHRFHDSFSCEANKPDFRELDLGSPVSPLRTRHSVPTASASGLTTTSSSSSSSGSVSGRNGYKLVTKRSDYDPNNHSGELSGSGENSPTAAGNARNFKSPQARADSKSTQPLIYSGQSSSVNSPPPNFLPTGNICPSGKILKTAAVASRSSRTDVLGSGIGYYGHGSIMRGGATSKGNAGGTTGAANTRASGGGSVTESVKRAAVSVDPEDVKRAGNEQYKRGHFTEALNLYDRAIALSPANAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLFCPGLPPDPSELQKLQLVEKHFGKCTDSRKIGDWKSVLREIDAAVSSGADSCPELLLCRAEALLKLHQVDDAESSLLNNPKLEPYTNSSSQARFFGFLSDAYSFFVKAQIEMALGRFENAVTAAEKAGQIDPRNIEVTVLLKNVRMVARARAHGNDLFKSERFTEACSAYGEGLRMDPSNSVLYCNRAACWFKLGHWEQSIEDCNQALHFQPNYSKALLRRAASNSKLERWAVAVKDYEILRRDLPDDSEVAEALFHAILALKKSRGEEVHDLKFGGEVEEISGLEQFRAAIALPGVSVVHFEIASNPQCKQISPFMGTLCGRYPSINFLKVDIQDCPMVATAESIRIVPTFKIYKNGCRVKEIVCPSRDMLEHSVRHYSF 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1138 697 SMART tpr_5 497 530 IPR019734 GO:0005515
Acco08g1138 697 SMART tpr_5 466 496 IPR019734 GO:0005515
Acco08g1138 697 SMART tpr_5 225 258 IPR019734 GO:0005515
Acco08g1138 697 SMART tpr_5 259 292 IPR019734 GO:0005515
Acco08g1138 697 SMART tpr_5 531 564 IPR019734 GO:0005515
Acco08g1138 697 SMART tpr_5 369 402 IPR019734 GO:0005515
Acco08g1138 697 SMART tpr_5 417 450 IPR019734 GO:0005515
Acco08g1138 697 FunFam TPR repeat-containing thioredoxin TTL4 589 696 - -
Acco08g1138 697 MobiDBLite consensus disorder prediction 91 143 - -
Acco08g1138 697 SUPERFAMILY TPR-like 368 554 IPR011990 GO:0005515
Acco08g1138 697 CDD TRX_family 602 689 - -
Acco08g1138 697 Pfam Tetratricopeptide repeat 231 291 - -
Acco08g1138 697 SUPERFAMILY Thioredoxin-like 500 695 IPR036249 -
Acco08g1138 697 Pfam Tetratricopeptide repeat 499 530 IPR001440 GO:0005515
Acco08g1138 697 Pfam Thioredoxin 603 687 IPR013766 -
Acco08g1138 697 SUPERFAMILY TPR-like 226 315 IPR011990 GO:0005515
Acco08g1138 697 Gene3D Tetratricopeptide repeat domain 223 581 IPR011990 GO:0005515
Acco08g1138 697 ProSiteProfiles TPR repeat profile. 417 450 IPR019734 GO:0005515
Acco08g1138 697 Gene3D Glutaredoxin 582 695 - -
Acco08g1138 697 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Acco08g1138 697 MobiDBLite consensus disorder prediction 46 78 - -
Acco08g1138 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 694 IPR044534 -
Acco08g1138 697 MobiDBLite consensus disorder prediction 28 143 - -
Acco08g1138 697 Pfam Tetratricopeptide repeat 419 449 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1138 Acco-ChrAcco08 11683865 11687194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1138 462 533 U-box Gene Family AT3G07370 37.500 1.23e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3215 01 49557110 49560233 Acco08g1138 08 11683865 11687194 CCT
Acco08g1138 08 11683865 11687194 Acco01g3414 01 51118047 51121128 CCT
Acco08g1138 08 11683865 11687194 Acco08g1138 08 11683865 11687194 ECH