Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1129 ATGGATCCCACCAAGGAGCGAAAGCTTGATGACAACGGCGTCATCACTTTCGATTCCGACTTAAACCTCACTCCTTACGACGCTCGCAAAATCATTGAGCGCTTCAGCCCCGAGCAGCTCATCGATGTTCTCCAGGAAGCCGTCGTTCGTCACGCTGACGTCCTCGACGCCGTGCGGTCAGTCGCCGACCCTGATGTCACCCAACGCAAGCTGTTTATCCGTGGTCTTGGATGGGAGACCACCACTGACGGCCTTCGTTCCCTGTTTTCCGCCTATGGTGAGCTTGAAGAAACCATTGAGCCCAGAAAGAGGATAGATGGTCGCGTTACTGTGACGCAGCTTGCAGCGGCTCGTTATACTGGATCAAATACCAACGGGGCCTACATAGCGATGCGGAAGATATATGTTGCGAATGTGCCGTCTGATCTACCGGCCGATAAATTGTTGGCTCACTTCTCACTTTATGGAGAGATTGAGGAGGGGCCATTAGGGTTTGATAAGCAGACTGGTAAGTCGAAGGGGTTTGTACTTTTTGTGTACAAGACGCCGGAGGGCGCAAAAGCGGCACTTGTGGATCCGGTGAAGATGGTCGAGGGAAGGCAGCTGAATTGCAAGTTAGCGATAACAATGGGTCCTGATGGAATTCAATTAAGGCCCAAGGAATTTTCACACAAATCGTTAGATAATTAA 690 0.5101 MDPTKERKLDDNGVITFDSDLNLTPYDARKIIERFSPEQLIDVLQEAVVRHADVLDAVRSVADPDVTQRKLFIRGLGWETTTDGLRSLFSAYGELEETIEPRKRIDGRVTVTQLAAARYTGSNTNGAYIAMRKIYVANVPSDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFVLFVYKTPEGAKAALVDPVKMVEGRQLNCKLAITMGPDGIQLRPKEFSHKSLDN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1129 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 141 IPR000504 GO:0003723
Acco08g1129 229 Gene3D - 52 130 IPR012677 -
Acco08g1129 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 191 IPR000504 GO:0003723
Acco08g1129 229 SUPERFAMILY RNA-binding domain, RBD 62 136 IPR035979 GO:0003676
Acco08g1129 229 PANTHER GEO13361P1-RELATED 125 214 - -
Acco08g1129 229 SMART rrm1_1 70 132 IPR000504 GO:0003723
Acco08g1129 229 SMART rrm1_1 133 205 IPR000504 GO:0003723
Acco08g1129 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 209 IPR000504 GO:0003723
Acco08g1129 229 SUPERFAMILY RNA-binding domain, RBD 123 213 IPR035979 GO:0003676
Acco08g1129 229 Gene3D - 131 210 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1129 Acco-ChrAcco08 11611426 11612206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1129 18 98 C2H2 Transcription Factor Family AT2G19380 33.333 2.67e-14 69.7