Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1127 ATGGATCTCACCAAGAAGCGAAAGCTTGATGACAACGGCGTCGTCACTTCCGATTCCGACTTAAACCTCAGTCCTTCCGACGCTCGCAAAATCATTGAGCGCTTCAGCCCCGAGCAGCTCATCGATGTTCTCCAAGAAGCCGTCGTTCGTCACGCTGACGTCCTCGACGCTGTGCGGTCTATCGCTGACCCGGATGTCACCCAACGCAAGCTGTTTATCCGCGGTCTTGGATGGGAGACCACCACTGACGGCCTTCGTTCCCTGTTTTCGGCCTATGGTGAGCTTGAAGAAGCCATTGTCATTCTTGATAAGGCCACCGGTAAGTCTAAGGGTTATGGATTTGTTACCTTCAAGCACGTCGATGGTGCTTTGCTTGCTCTGAAGGAGCCCAGCAAGAGGATAGATGGTCGCGTTACTGTGACGCAGCTTGCAGCGGCTGGGAATACGGGATCAAATACCAACGCTGCCGATATAGCGATCCGGAAGATATATGTTGCGAATGTGCCGTCTGATATACCGGCTGATAAATTGTTGGCTCACTTCTCAGTTTATGGAGAGATTGAGGAGGGGCCATTAGGGTTTGATAAGCAGACTGGTAAGTCGAAGGGGTTTGCACTTTTTGTGTACAAGACGCCGGAGGGCGCGCAAGCGGCACTTGTGGATCCGGTGAAGATGATAGAGGGAAGGCAGCTGAATTGCAAGTTAGCGTTAACCGATGGGAAGCAAGGGAAGCGAGGTGGTACGGGGCCAATGGGTCCCGATGGAATTCAAGGTCCAGGGAATGTTCATGGCGATGGAATGGGTTTGGCCCCACCGTCTTCAATGCCAGGGTCACTTTCTGGTCAATACGGCGGGCCTGTCGGCATGGGATCTTATGGGGGTTTTGGGAGTGGACTTCCTGGTCAACCTCCACTTGGGAATCATCCTCTGAACTCATCTGTGGGTGGAACGGGGTTGTCTTCGGCAGGTAGTCAGGCGCCCTCTTCTCTGGGAGGTACTGGCGGGTGGAGGTAG 1014 0.5375 MDLTKKRKLDDNGVVTSDSDLNLSPSDARKIIERFSPEQLIDVLQEAVVRHADVLDAVRSIADPDVTQRKLFIRGLGWETTTDGLRSLFSAYGELEEAIVILDKATGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNAADIAIRKIYVANVPSDIPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALVDPVKMIEGRQLNCKLALTDGKQGKRGGTGPMGPDGIQGPGNVHGDGMGLAPPSSMPGSLSGQYGGPVGMGSYGGFGSGLPGQPPLGNHPLNSSVGGTGLSSAGSQAPSSLGGTGGWR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1127 337 MobiDBLite consensus disorder prediction 239 261 - -
Acco08g1127 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Acco08g1127 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Acco08g1127 337 Gene3D - 152 269 IPR012677 -
Acco08g1127 337 MobiDBLite consensus disorder prediction 306 331 - -
Acco08g1127 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 230 IPR000504 GO:0003723
Acco08g1127 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Acco08g1127 337 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Acco08g1127 337 Gene3D - 52 151 IPR012677 -
Acco08g1127 337 PANTHER GEO13361P1-RELATED 52 301 - -
Acco08g1127 337 SUPERFAMILY RNA-binding domain, RBD 155 264 IPR035979 GO:0003676
Acco08g1127 337 SMART rrm1_1 70 142 IPR000504 GO:0003723
Acco08g1127 337 SMART rrm1_1 162 234 IPR000504 GO:0003723
Acco08g1127 337 MobiDBLite consensus disorder prediction 294 337 - -
Acco08g1127 337 FunFam UBP1-associated protein 2C isoform A 52 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1127 Acco-ChrAcco08 11591752 11592854 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1127 157 277 C2H2 Transcription Factor Family AT2G19380 35.537 6.84e-12 64.7