Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1103 ATGACTGGTTCAGATATGGATCAACAAAGGCATGGGAATTCCAATTCTGAACCTTCTATTCTTGTCAGTAGTGCCAACGTTTTGCAGCCAAATATCCGCACAGTGGCAGCAGCTTCAGGGAACACGAGTAATCTTGATGTCTATGACAATGGAGTAATGCATAGAGGGACTCAGTACAATGCCAGTCAGAATCAGCATAATCTTGATATGGGTGTTGCAGCTGTGACCAACTTGCATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTGCCTCTTCCTACTAATCATGGAGCCTATGATCAGTTGCCAGCATCAAGCACATTTGCTGTGTCTGGAGTTTCTTCAGATAATTGCGGAAGGAGCAGCAGTTACGCTGATGATGTAAGAGCTTCATTCAAAAGAAAAAATGCTGAAACTTTTAGAGGCAATTTCCCACATTTTGATGCATCAGCTAGTTCTTCAGTTGTTCCCCCAAATGCAAGGCACTCTGAAGAGGTTACTATGATGGATACTGCTTCCTTGCCCCCGACTCAATTCCGAGGAAATAGCGTCCCTTCACCCATGGAATTAGGTCCCCCTGGTAGTTTGTGGAGCAGGTCAGGTGAGTCTGTTGCAGTGCATGAACAGAGCCATTTTATTCAAAGTAATTATTTAGGGCAGCCCTTCCAGCTAGTTGCTCCTCCCTGGTTGGATCAACAGTTGAATAGAAGCCACAGTGATGGACATACTACAGCTTGGAATCAGTCTTTTCCAATGCTTTATATACAAGCACCCAATGTTAATGGAAGTTCATTGGAGAATGCGAATATGGGTTTGCAGAGATATCATGATGCGGCTAATAACATAAATGGCCTCAGGTTTGTTCACCCTCCTGTCAACCACCAGCACCATAATTATCATCACCCGGCTATACCAATGAGAGGATTCAGAGGCCACAATATAGTTTTTCAACCTCCAGTGACTGCAGCTTCTTATAGATTTCCAACAAATCCTTTACACAATGCTACGATCCCACCGCAGAACGGTTTTGAGATGGGTCATGGGCATGCTGTTGGCCTTGTACCATCAGTAGGCCTACAGGCATATCATCCTCATAGACGATACATGAATGAGACAGCAATTGGGCATCAAAATCTTCACCCTATGGGCTATGTCCAAGTTGATGCAGATGTTGCAATATTGGATGAAGTGGGATTGGTGGACCATCACAGAGATATGCGTTTGGACATAGATAATATGTCCTATGAGGATCTTCTTGCATTGGGCGATCAAATTGGCCATGTAAGCACTGGTTTATCAGAAGAGACCATTTCAGCTGTAATGAAAACTAGAATTCATTCAACATGCACTATTATTAACCTGGAAGAGGACGAAGAAACTTCGAAGGATGAGGAAACTGAATGCTCAATATGCCTAGAAAAAATTTTGAACAGAGAGAAGATAGGATTTCTTAAATGTGGTCATGAGCATCATGCAGATTGCTTGAAGAAATGGCTTCGCGAGAAAAATATCTGTCCCCTATGCAAATTTGAACCAGGAAAGGACAAAGGAGAATAG 1563 0.4287 MTGSDMDQQRHGNSNSEPSILVSSANVLQPNIRTVAAASGNTSNLDVYDNGVMHRGTQYNASQNQHNLDMGVAAVTNLHYSGMNPSSSTGVLPLPTNHGAYDQLPASSTFAVSGVSSDNCGRSSSYADDVRASFKRKNAETFRGNFPHFDASASSSVVPPNARHSEEVTMMDTASLPPTQFRGNSVPSPMELGPPGSLWSRSGESVAVHEQSHFIQSNYLGQPFQLVAPPWLDQQLNRSHSDGHTTAWNQSFPMLYIQAPNVNGSSLENANMGLQRYHDAANNINGLRFVHPPVNHQHHNYHHPAIPMRGFRGHNIVFQPPVTAASYRFPTNPLHNATIPPQNGFEMGHGHAVGLVPSVGLQAYHPHRRYMNETAIGHQNLHPMGYVQVDADVAILDEVGLVDHHRDMRLDIDNMSYEDLLALGDQIGHVSTGLSEETISAVMKTRIHSTCTIINLEEDEETSKDEETECSICLEKILNREKIGFLKCGHEHHADCLKKWLREKNICPLCKFEPGKDKGE 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1103 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 515 IPR013083 -
Acco08g1103 520 SMART ring_2 470 510 IPR001841 -
Acco08g1103 520 CDD RING-H2_RNF24-like 470 511 - -
Acco08g1103 520 ProSiteProfiles Zinc finger RING-type profile. 470 511 IPR001841 -
Acco08g1103 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 67 511 IPR045191 GO:0061630
Acco08g1103 520 SUPERFAMILY RING/U-box 461 514 - -
Acco08g1103 520 Pfam Ring finger domain 469 511 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1103 Acco-ChrAcco08 11116990 11119163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1103 403 513 C3H Transcription Factor Family AT2G15530 50.450 2.81e-31 126