Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1095 ATGGGAGCAAAAGGAGCTCATGCGTTATGCCTCACCCCCCCCCTCTCTCTCTCATCAATGGAGACCCATTACCCCCTCTCCTCCGACAACCATGATGCTGTTTTACCTCCTGGCTTTCGCTTCCACCCTACAGATGAAGAACTCATCACTTACTACCTCCTCAAGAAAGTCCTCGACAATAATTTCTCTGGTAGAGCCATTGCTGAAGTTGACCTCAACAAATGTGAGCCCTGGGAGCTTCCTGAGAAAGCGAAGATGGGAGAGAAGGAGTGGTACTTCTTTAGTCTTCGAGATAGGAAGTACCCAACTGGGCTGAGAACCAATAGGGCTACAGAAGCAGGTTACTGGAAGGCCACTGGGAAAGATAGAGAAATCTACAGCTCTAAGATTTGTGGTTTAGTTGGCATGAAGAAGACTCTTGTCTTCTACAGAGGAAGAGCCCCCAAAGGCGAGAAGAGCAACTGGGTTATGCACGAGTATCGCCTTGAAGGAAAATTCGGCTACCATTATCTCTCTCGCTCTTCCAAGGATGAGTGGGTCATTTCCCGTGTTTTCCAGAAGAGCGGCTCCGGCAACGGTGGCGGATCTGCTGCCATATCCTCCTCGTGCAGTGGCTCGAAGAATAAGACCCGAAACATCATGAGCTCTTCTTCTAACTTGAGTCTGTACTCGGTTGAACCGGGTTCTCCTTCCTCGGTCTACCTTCCACCCCTGCTTGATTCCTCTCCGTTCTCGGCTGCCGCCGCCGCAGACAGTTGCTCTAATACTTATGACAGCTTGATTACCCCAAGAGAGCACGTGTCCTGTTTCTCCACATTGTCTGCCACCACCAGCAACAACTACAGCTTTGACCTGCCTCCTTCCGCGCCGCCGCCGTCTGTCACGGTGGATCCCTTTGCTCGTTTTCAGAGAAGCGGCGGCGTCTCCTTCCCGAGCTTGAGGTCGCTCCATCTGCAAGACAACCTTCAGCTTCCCTTCTTCATCCCGCCGCCGCCGCCGCAGCAGCCCATCCATGGTGTTCCTGTTGACATGAACTGGGCTACACCGATGACCGAGCAGAGGGTAGCGGACGGTGGCTCCGAGCTTGATTGCATGTGGGGATTCTAA 1107 0.5285 MGAKGAHALCLTPPLSLSSMETHYPLSSDNHDAVLPPGFRFHPTDEELITYYLLKKVLDNNFSGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKICGLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFGYHYLSRSSKDEWVISRVFQKSGSGNGGGSAAISSSCSGSKNKTRNIMSSSSNLSLYSVEPGSPSSVYLPPLLDSSPFSAAAAADSCSNTYDSLITPREHVSCFSTLSATTSNNYSFDLPPSAPPPSVTVDPFARFQRSGGVSFPSLRSLHLQDNLQLPFFIPPPPPQQPIHGVPVDMNWATPMTEQRVADGGSELDCMWGF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1095 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 34 248 - -
Acco08g1095 368 SUPERFAMILY NAC domain 33 187 IPR036093 GO:0003677|GO:0006355
Acco08g1095 368 ProSiteProfiles NAC domain profile. 35 187 IPR003441 GO:0003677|GO:0006355
Acco08g1095 368 FunFam NAC domain-containing protein 100-like 44 191 - -
Acco08g1095 368 Pfam No apical meristem (NAM) protein 36 162 IPR003441 GO:0003677|GO:0006355
Acco08g1095 368 Gene3D NAC domain 44 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1095 Acco-ChrAcco08 11001280 11003564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1095 23 368 NAC Transcription Factor Family AT5G53950 55.759 1.23e-110 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco08g1095 NAM 6.9e-41 No_clan