LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco08g1092	ATGAAAGGCGTGTGCACACGTGGCAGGAAGATATTGGCGAACAGTATCCTCCGCAAACATTGCGTCTCCTTCCTACACTCTCTCTCCAAATCTCTCTCTCTTCTCATAAAGTTCTCTTTTTCAAAGTCGTCAGCGACGAACATGGCTCCTAGACCCGCTGCTGTCGCCGCCTCCAACCCGCCCAACTCTGCCAAGGAGATCCGGTACAGAGGCGTCCGCAAGAGGCCGTGGGGGCGTTACGCGGCGGAGATTCGTGATCCTGGCAAGAAAACGCGGGTTTGGTTGGGAACTTTTGATACGGCTGAGGAGGCGGCGCGTGCTTATGACGCGGCAGCTAGAGACTTCCGTGGTGCTAAGGCTAAGACTAATTTCCCCTGTCCGTCTGAACTTCCGAACAACTTCAGTCGCAGCCCTAGCCAGAGCAGCACGCTCGAATCATCCTCGCCGCCGCCAGTTGCTGTTCCCCCACCGCTAGAACTTTCCCTTGGAACGCTCGTTTCCGGCGGCGCGTTGGGGCTCCCTGTCATTCAGGTGGCTCGTCCTGTCATGTTTTTTGACGCGTTTGCTCGGGCAGAACGTGTGATGGCAGCTGCAGGCCGCCGTGAGATGTGCGGGTTTGATCGACCTGTTGCAGACTTCCGCCGCTCCGTCGGCGACGGTTGTGCCCACAGTGACTCTGATTCGTCTTCTGTCGTGGATTACGAGCGTGCTTCGCCACGAACAGTCTTAGATCTTGACCTTAATGTCCCCCCTCCGCCGGAAATTGCCTGA	771	0.572	MKGVCTRGRKILANSILRKHCVSFLHSLSKSLSLLIKFSFSKSSATNMAPRPAAVAASNPPNSAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPCPSELPNNFSRSPSQSSTLESSSPPPVAVPPPLELSLGTLVSGGALGLPVIQVARPVMFFDAFARAERVMAAAGRREMCGFDRPVADFRRSVGDGCAHSDSDSSSVVDYERASPRTVLDLDLNVPPPPEIA	256

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco08g1092	256	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	51	234	-	-
	Acco08g1092	256	PRINTS	Ethylene responsive element binding protein signature	69	80	IPR001471	GO:0003700\|GO:0006355
	Acco08g1092	256	PRINTS	Ethylene responsive element binding protein signature	91	107	IPR001471	GO:0003700\|GO:0006355
	Acco08g1092	256	SMART	rav1_2	68	131	IPR001471	GO:0003700\|GO:0006355
	Acco08g1092	256	Gene3D	AP2/ERF domain	67	126	IPR036955	GO:0003700\|GO:0006355
	Acco08g1092	256	MobiDBLite	consensus disorder prediction	126	148	-	-
	Acco08g1092	256	FunFam	Ethylene-responsive transcription factor 2	68	126	-	-
	Acco08g1092	256	ProSiteProfiles	AP2/ERF domain profile.	68	125	IPR001471	GO:0003700\|GO:0006355
	Acco08g1092	256	CDD	AP2	68	125	IPR001471	GO:0003700\|GO:0006355
	Acco08g1092	256	Pfam	AP2 domain	68	117	IPR001471	GO:0003700\|GO:0006355
	Acco08g1092	256	MobiDBLite	consensus disorder prediction	126	155	-	-
	Acco08g1092	256	SUPERFAMILY	DNA-binding domain	68	125	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco08g1092	Acco-ChrAcco08	10954277	10955176	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco08g1092	47	186	AP2-EREBP Transcription Factor Family	AT3G15210	62.745	8.16e-54	171

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco08g1092		AP2	9.7e-15	CL0081