Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1081 ATGCATCCCAACATCGTCCCCAAGGTGGAGGAGGAAGTGGCGGTGGCGGCGGGAGAGAAAATGTGGGAAGTGAAGCAAGACCCCAAAAGAGCTGTGGAAGCGTCAGATATGGCAACAGACAGTGTTCATGGCGCCATTAACCAAGGTTTTGGAAAGAAGCTCAAAGAACTGCCGACTTGGCTCAACACAAATATTAATAATGATGAGCTCAATAAGAAAGGCTCAAACAATAATTGGAGCAGATTCTGTCTACACAAAGACACATGGAAGCAGCAGAAGAGGAAGGAGAAGAATCCACTTGACAGCAATTATTTGCTTTTGTCCATTCACAATAACAATTGCTCACAACTGTCCTACACAATTCTCTCTCTGTTGGGCCACCTTAACGTGTCCCAGTCACGGATGTACCTTTGTGGGGTTGTTGCAGGGCTTTATGGTCGTGGTGGATGCATCACCTGCAATTGCATAACAATTATAGACATTAGCTTCAATGGAGACTGGTTAAGCATTTCCATACTTAAAGAAGGCATTATAACCTTGCAGAGTTTCCTGGAAGATGCTAAGAGATGGCTTGTTCCACTCAGTGTACTACTTGCCCCACCATTTCCTTCTCCTCCATTAACACCACCTTATTGTAAAGCTCTCACAACGGAAGCCAAGATGGAGAGGAAGGGAACTTTAGTTGAGAAGGTAAGGAAGGATAACAACATAGTTGAAGAAGAAGAAGTAGAGGATGAGATAGAAGAGGAAGAAGAAAACGGTGGTGGAGGTGGCGATGTTGCAGAAGAGCAGAAGAGGAAAGGTGTCATGGTAAGTGGAAGAAGAGGGTCAAGTGGAACCGGCGGAGTTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGGAGCTAATCTGAGTGATGCAAAGCGGTACCATCGCCGCCATAGGGTGTGTGAGTTCCACTCCAAGGCGCCGGTTGTCATGGTTGCAGGGCTAAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGATTTGGGGGAATTTGATGAGGCCAAGAGAAGCTGCCGAAGGCGCTTAGCTGGGCACAACGAACGTCGCCGCAAAAGCACTGGTGAAATTTACAATGAGAGCTGCAGCCATGGCAAAGGTAACCACACAAAGGAGAGCCATTGCAGGCATGCTGATGGTAGAGGAAGAGTTCAAATGAGCGTTCCTGGGAGTTCTGGCTACAAATCTTTTCACATAAAATAA 1230 0.4699 MHPNIVPKVEEEVAVAAGEKMWEVKQDPKRAVEASDMATDSVHGAINQGFGKKLKELPTWLNTNINNDELNKKGSNNNWSRFCLHKDTWKQQKRKEKNPLDSNYLLLSIHNNNCSQLSYTILSLLGHLNVSQSRMYLCGVVAGLYGRGGCITCNCITIIDISFNGDWLSISILKEGIITLQSFLEDAKRWLVPLSVLLAPPFPSPPLTPPYCKALTTEAKMERKGTLVEKVRKDNNIVEEEEVEDEIEEEEENGGGGGDVAEEQKRKGVMVSGRRGSSGTGGVSPPSCQAERCGANLSDAKRYHRRHRVCEFHSKAPVVMVAGLRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKSTGEIYNESCSHGKGNHTKESHCRHADGRGRVQMSVPGSSGYKSFHIK 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1081 409 ProSiteProfiles Zinc finger SBP-type profile. 285 362 IPR004333 GO:0003677
Acco08g1081 409 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 260 363 IPR044817 GO:0003677
Acco08g1081 409 Pfam SBP domain 288 361 IPR004333 GO:0003677
Acco08g1081 409 MobiDBLite consensus disorder prediction 374 390 - -
Acco08g1081 409 MobiDBLite consensus disorder prediction 353 409 - -
Acco08g1081 409 Gene3D - 279 349 IPR036893 GO:0003677|GO:0005634
Acco08g1081 409 SUPERFAMILY SBT domain 286 366 IPR036893 GO:0003677|GO:0005634
Acco08g1081 409 Coils Coil 233 253 - -
Acco08g1081 409 MobiDBLite consensus disorder prediction 240 289 - -
Acco08g1081 409 MobiDBLite consensus disorder prediction 240 257 - -
Acco08g1081 409 FunFam Squamosa promoter-binding-like protein 14 280 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1081 Acco-ChrAcco08 10829734 10835886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1081 271 365 SBP-box Gene Family AT1G53160 70.526 3.93e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco08g1081 SBP 6.8e-31 No_clan