Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1052 ATGGAGGGTTCCTCAGGGTCTGTTTGGCAAAAGTCCAACACTTTTCAGATATTAAACACTTCTGAAGTTTCAGACAGAAACGCTTATTGTGGTCAGACATCTAATAATTCTTCTGGCTTCAAGAAGGACAAAGATAGAGTTGTGTTGGCTCAATCTCAAGGTGATCAGCCAAAAAATCTGGCAAGTTTCTCCGGGGTTCATGAGTACGAGGTTGCTGTTGGCCCTTATGTTCATTCTGTAAAATGGGGTGATGTTAGCTTGAGGCAGTGGATAGATAAACCTGAACGCTTGGTAGATGAATTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAACACAGCACATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCATGCCTTGTCATGTCATCTTTCAATCACATCTCCTTCATTGAGTCTGAAACTTCAGGTTCTGGTTCCGATTCTTTAGAAAATGGAATAAACAGCCTAAGTACTCAGATTAAAAAAAACCCTGCTTTTTTCTGTTCCCCTGATATGCATCACCAGAGAAGTTCAGATTCTAGTTGCATGCTGTCCAATGCAGCGTATGCAGCTCGCACTTCTTTAATTGAAGATACCGAAGAAAATGAAGTCAGAGACAGGATGAACACTGAAGAAATAGAAGGAAAGTTTCCAATGAAACAGTTACTGCAAATGGAGACTAGTTGGTATACTAGTCCTGAAGAGGTGGCTGGTACTTCAAGTTCCTTTGCTTCAGACATCTACCGGCTGGGTGTTCTTCTGTTTGAGCTACTCTGTCCATTCAGCTCAAAAGAAGAAAAGAGCAGAACAATGTCCAGCCTTAGACATAGAGTTCTTCCTCCACAGTTCCTTCTGAAGTGGCCGAAAGAAGCTTCCTTCTGCTTATGGTTGCTTCACCCTGAACCTAGTAGTCGTCCAACACTAGGAGAGTTGTTGCAGAGTGAGTTCCTTAATGAACAGAGAGATGATATGGAAGAACGTGAAGCAGCAATAGAACTTAGAGAAAAAATAGAGGAACAAGAATTATTACTAGAATTCCTTTTGTTAATTCAGCAGAGAAAAATGGGTGTTGCTGATAATTTGCAGCATACTGTTTCTTTTGTGTGGTCAGATATTGAAGAAGCTACCAAGCAGCAAATAGTATCTAAAGAAGTTGTTGAGCGTGAACATTCTGCTGGCCTAGCGACTACAAAGCATATAAGATCAGAAATGTATCCTTGCAACATTCAAAAATGCAATGATCAAAACAATTGTGGAGATGTTTTTTCAAATAAATCTCGGCTAATGAAGAACTTCAAGAAACTAGAGTCAGAATACTTTTTAATGCGATGTAAGTCATCGATGAAACCAATGGTTACTGATGGTGAAGGCTCCATTATGGTGACTGAAAGAGGTTTTGTCAATAATTTTGCCTCAAAAAACCAATCCAGAGAGGAAAGAATTGCTAAGAAGAATTCTTTCCTTGAGGGTTTGTGCAAGTACCTATCTTTCAGTAAGCTAAAGGTTAAGGCTGACCTGAAACAAGGTGATCTGTTGCAATCTTTGAACCTAGTATGCGCACTCAGTTTCAATCGTGAAGAGGCATTTTTGGCTACTGCTGGCGTGAGTAAAAAAATTAAAGTTTTTGATTATGAGTCAATCATAAATGAGGATCGTGATATCAGCTATCCAGTAGTGGAGATGGCTAGCAGGTCAAAGTTGAGCAGCATATGTTGGAACACTTACATCAAAAGCCAAATAGCTTCTAGCAACTTTGAAGGTGTAGTACAGTTATGGGATGTGACAAGAAGTCAACCACTGTCTGAAATGATGGAGCATGAGAGGGGGGTATGGTCCATCGATTTCTCATCAGCAGACCCGAAAATGTTGGCAAGTGGGAGCGATGACTGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGGACCATCAAAACAAAGGCTAATGTATGCAGTGTTCAGTTTCCCCCAGATTCTGCTCGTTTCGTTGCGTTTGGTTCAGCAGATCATCGAATATATTACTATGATCTGAGGAACTTGAAAACGCCTCTTCAGATATTTTGTGGACATGACAAGACTGTGAGTTACATCAAGTTTGTGGACAGTGTGAACCTTGTCTCAGCATCCACAGACAACACTTTGAGGCTTTGGGATTTTTCTGCATGCCCATCTCAAGTCATAGACACACCAATTCAAACATTCACAGGTCACATGAATGTTAAGAACTTTGTGGGATTGTCAGTATCTGATGAATTCATTGCCACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCAATGTCTTTCAAGTTTCAGAACACAGACCCATTTTCTGGGAAACAAGTGGATGATTCTGCCCAGTTCATCTCTTCTGTTTGCTGGCGCAGTCAGTCAAACACCTTAGTTGCTGCAAATTCCACTGGGAATCTCAAAATTCTGGAGATGGTTTGA 2496 0.4067 MEGSSGSVWQKSNTFQILNTSEVSDRNAYCGQTSNNSSGFKKDKDRVVLAQSQGDQPKNLASFSGVHEYEVAVGPYVHSVKWGDVSLRQWIDKPERLVDEFECLHIFRQIVEIVNTAHSQGIVVHNVRPSCLVMSSFNHISFIESETSGSGSDSLENGINSLSTQIKKNPAFFCSPDMHHQRSSDSSCMLSNAAYAARTSLIEDTEENEVRDRMNTEEIEGKFPMKQLLQMETSWYTSPEEVAGTSSSFASDIYRLGVLLFELLCPFSSKEEKSRTMSSLRHRVLPPQFLLKWPKEASFCLWLLHPEPSSRPTLGELLQSEFLNEQRDDMEEREAAIELREKIEEQELLLEFLLLIQQRKMGVADNLQHTVSFVWSDIEEATKQQIVSKEVVEREHSAGLATTKHIRSEMYPCNIQKCNDQNNCGDVFSNKSRLMKNFKKLESEYFLMRCKSSMKPMVTDGEGSIMVTERGFVNNFASKNQSREERIAKKNSFLEGLCKYLSFSKLKVKADLKQGDLLQSLNLVCALSFNREEAFLATAGVSKKIKVFDYESIINEDRDISYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQPLSEMMEHERGVWSIDFSSADPKMLASGSDDCSVKLWSINQGVSVGTIKTKANVCSVQFPPDSARFVAFGSADHRIYYYDLRNLKTPLQIFCGHDKTVSYIKFVDSVNLVSASTDNTLRLWDFSACPSQVIDTPIQTFTGHMNVKNFVGLSVSDEFIATGSETNEVFIYHKAFPMPAMSFKFQNTDPFSGKQVDDSAQFISSVCWRSQSNTLVAANSTGNLKILEMV 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1052 831 SMART WD40_4 645 684 IPR001680 GO:0005515
Acco08g1052 831 SMART WD40_4 735 774 IPR001680 GO:0005515
Acco08g1052 831 SMART WD40_4 688 726 IPR001680 GO:0005515
Acco08g1052 831 SMART WD40_4 602 642 IPR001680 GO:0005515
Acco08g1052 831 SMART WD40_4 790 829 IPR001680 GO:0005515
Acco08g1052 831 SMART WD40_4 514 549 IPR001680 GO:0005515
Acco08g1052 831 SMART WD40_4 560 599 IPR001680 GO:0005515
Acco08g1052 831 SUPERFAMILY WD40 repeat-like 522 828 IPR036322 GO:0005515
Acco08g1052 831 SMART serkin_6 2 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1052 831 PANTHER PROTEIN SPA1-RELATED 2 47 831 IPR044630 GO:0009640
Acco08g1052 831 ProSitePatterns Trp-Asp (WD) repeats signature. 713 727 IPR019775 -
Acco08g1052 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 695 728 - -
Acco08g1052 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 695 728 IPR001680 GO:0005515
Acco08g1052 831 Pfam WD domain, G-beta repeat 690 726 IPR001680 GO:0005515
Acco08g1052 831 Pfam WD domain, G-beta repeat 609 642 IPR001680 GO:0005515
Acco08g1052 831 Coils Coil 320 340 - -
Acco08g1052 831 Gene3D - 493 831 IPR015943 GO:0005515
Acco08g1052 831 ProSiteProfiles Protein kinase domain profile. 1 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1052 831 SUPERFAMILY Protein kinase-like (PK-like) 84 332 IPR011009 -
Acco08g1052 831 PRINTS G protein beta WD-40 repeat signature 629 643 IPR020472 -
Acco08g1052 831 PRINTS G protein beta WD-40 repeat signature 586 600 IPR020472 -
Acco08g1052 831 PRINTS G protein beta WD-40 repeat signature 713 727 IPR020472 -
Acco08g1052 831 Gene3D Transferase(Phosphotransferase) domain 1 84 335 - -
Acco08g1052 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 609 646 - -
Acco08g1052 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 651 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1052 Acco-ChrAcco08 10393093 10398308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1052 599 773 Miscellaneous Gene Families AT5G08390 24.581 1.55e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Acco08g1052 WD40 0.0039 CL0186