Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1034 ATGTTACTCGACCTTGCTCAGGCTGGTGGATCCGGGGCGGATCAACAGTTTGTTGATTGGTTTCTCCATCCTCATTATGTTGATCATCTCGGTGTTCCCTTTGAGGAAGCAGTCGTATATCCGAGTTGTCAATCTGGAATTCTGGAGTGGAATTGTCCTGATTGGTGTTTACCAGGGTTTGCTCTGTCCGTCCATCCTCAAGGGGAAGGCGGATGGCTTTTGCTTCTGGGCAAATTGTTGAAGAAGAGGAAAATAAAAATAGAACCATCGTGCTTTGACTGTAATGAGGGCATCTCGAGTGAAAAAAATTCGAAGTCAATTTCTTCACAGATAAGCGTAGCTGATAGTGACAACAATTGTTGCTTTGAGTGCAATATATGCTTAGAGTCACCTCATGATCCTATGGTCACTCTTTGTGGTCACCTCTACTGTTGGCTTTGCATATTCAGGTGGTTTCAAGTTCAGAACTCTTCTGATGATGATGACCACCTGCAACCTACATGCCCGATTTGTAAGGCCGATCTTTCTCATACTTCATTAGTCCCTCTTTATAGCCGAGGTGCTCATAGTTCAGATTCTGAACTCAAGAAAACCAGAACGGATATAGGAATACCCCGTAGACCGCCCCCTCTCGGCTCGAACACTATGTTAAATTCTACAAGTGCATCTACTTCACAGCAATACTCGCCTCACCTTTATGGAGGATATGCTGTTACTAGATCACCATATCTTGGAGTTTCAGCCCTCACTAGTTTCTGTTATCCTATTATTGATATGTTGAGGGAAATGGTCTTTGCAAGGACCTTTGGGAGTTCGGATTCTAATTCATTGGCGTATCGTTATGTTGGTTACTACCCTCATAATATTGGAAGTGACAGTCATAGATTGAGAAGGCAGGAAAGGCTCATTGACAAGTCTCTAAGCAGAGTATCTTTCTTTCTTTTCTGTTGTGTCATTCTATGTCTTCTCTTGTTTTGA 978 0.4284 MLLDLAQAGGSGADQQFVDWFLHPHYVDHLGVPFEEAVVYPSCQSGILEWNCPDWCLPGFALSVHPQGEGGWLLLLGKLLKKRKIKIEPSCFDCNEGISSEKNSKSISSQISVADSDNNCCFECNICLESPHDPMVTLCGHLYCWLCIFRWFQVQNSSDDDDHLQPTCPICKADLSHTSLVPLYSRGAHSSDSELKKTRTDIGIPRRPPPLGSNTMLNSTSASTSQQYSPHLYGGYAVTRSPYLGVSALTSFCYPIIDMLREMVFARTFGSSDSNSLAYRYVGYYPHNIGSDSHRLRRQERLIDKSLSRVSFFLFCCVILCLLLF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1034 325 ProSiteProfiles Zinc finger RING-type profile. 124 172 IPR001841 -
Acco08g1034 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 100 322 IPR045103 GO:0005783|GO:0006511|GO:0061630
Acco08g1034 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 185 IPR013083 -
Acco08g1034 325 SMART ring_2 124 171 IPR001841 -
Acco08g1034 325 Pfam Zinc finger, C3HC4 type (RING finger) 124 171 IPR018957 GO:0046872
Acco08g1034 325 MobiDBLite consensus disorder prediction 195 214 - -
Acco08g1034 325 ProSitePatterns Zinc finger RING-type signature. 139 148 IPR017907 -
Acco08g1034 325 SUPERFAMILY RING/U-box 121 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1034 Acco-ChrAcco08 10237621 10240870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1034 102 311 C3H Transcription Factor Family AT4G27470 36.726 1.11e-41 143