Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1021 ATGACCAGAGCCGGGGACGAAGAAGAGGAAGACGAGTGCTTCTACGAGTCCCACGACCGCCTAGTTTCCTCATCTTGTTCTTGTTCCACTTCTAACTCCGACGACGATAACGACTCCTATTCCAACTCTCCCAATTATGGTTCCAACCAGCCCTTCCCTGTCCCCAAATTCCCAGTCGCCATGTCTAAGTTTGATATATGGATCTCCGAACCCTCCTCGGTGTTGGAACGCCGGACCCGTCTCCTCCACGAGATGGGCCTCAGCGGTGACCCATCATTGTCCCGGGGAAAGCCTGCCTCCGCCGCGGATCTTAGAGAAATGGGCAATGGAGAGTTTGAGCGGTCGGCTTCGTCCGATCACTTAAGCCGTCAACAGGCTGCAAGTTCCAGCAGTTCCACCGGCATGTTCCGATCGAAATCAGACGGAGCAGCGGATCGCAGTGACTTGTCTGTGTCTGGTCAGTCTCATGATCGTTGTAATAAGTCTTCTTTTTGTTCGTCTTCTTCAATTCTTTCTATTCATTCGGTCGCGCCAGAGACCGGTTCATTTGTAAATAACTGTAATCTCGTCTTTAAGTCAAGGGGAGTTAATGGTAATGGATCGCCAGTTGCTAGTGCCGGTTCCCTTAATAAGCCGCCTTCTGGGAAAAATTGTAAAAGGGTGGATGAAATTCAGAGCGAATCGAGTGTGGATGTCGGTCATAGTTTGGTGGCGTCCGTTTCTGAAATTGCAGGTGGGGAGGTAGAGGAGGTTGTGGATTGTGATGGAGTTGACAGCGTAAACGAACAAGTGTGTACCATAAGAGATCTCGATAATGGGAAGGAGTTTGTAGTCAAGGAGGTTAGGGAAGACGGAACGTGGAGCAAACTCAAAGAAGTGGGGACTGGAAGGCAGTTGACTATGGAGGAGTTTGAGATGACGGTTGGGCACTCTCCAATAGTTCAAGAATTAATGAGACGGCAAAATGTTGAGGAGGGAAATAAGGATAATGTAGATCCTAATGTAAGTGGCGGGAGTGGAGAGGGTTCCAAGCCAAAGAAGAAGGTGGGTTGGTTTAAGAGTATAAAGAGTGTTGCGAGCACTATGGCGGGTTATAAAGAGAGACGAAGTAGTGATGAAAGAGATACCTCATCTGAGAAGGGTGGGCGCAGGTCAAGCTCAGCAACCGATGATAGCCAGGATGGTTCATTTCACGGGCCTGAGAGAGTACGGGTTAGGCAGTATGGGAAGTCTTGTAAAGAGCTTACAGGACTTTATAAGAGCCAGGAAATACAGGCTCATAATGGATCTATATGGAGCATTAAGTTTAGTTTGGATGGAAAATATCTTGCCAGTGCAGGTGAGGATTGTTTAATACATGTTTGGCAAGTTGTGGAGTCAGAGAGGAAGGGAGAGCTACTGATGGAGAAAGCAGAAGATGGGAACATGAACATGTTGTTTGTTGTGAATGGGTCGCCGGAACCAACTCTTCTATCCCCTGCAAGGGACAATCATCCAGACAAGAAGAGAAGGGGGAGGTCATCCATAAGCAGAAAATCTTTGAGCTTGGACCAATTAGTGGTGCCAGAAACTATTTTTGCTCTCACAGAAAAACCCTTTTGCTCATTCCAAGGTCATCATAATGATGTCCTTGATCTATCTTGGTCCAAGTCTCAGCATTTGCTCTCATCTTCTATGGACAAAACAGTGCGCCTATGGCACTTGACCAGCCAGACTTGTTTGAAAGTTTTTTCACACAGTGACTTTGTAACCTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCACTGGATTCTAAGGTTCGCATATGGAGCATTCCTGATCATCAGGTTGTTGACTATACTGATCTACATGAGATGGTCACTGCGGCTTGCTATACATCTGATGGGCAGGGTGCATTAGTTGGTTCTTACAAGGGTAGCTGCCATTTATATGATACATCTGATAATAAATTGCAACAGAGAAGTCAAATCAATTTGCAGAACAAGAAAAAGAAATCGCATCACAAGAAAATCACCGGCTTCCAGTTTGCCCCAGGAAGTTCTTCAGAGGTACTCATCACGTCTGCTGATTCAAGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCATAAGTTCAAAGGATTTCGTAACCCAAATAGCCCGATTTCTGCCTCTCTCACAGCAAATGGTAAATATGTAATCTCAGCGAGTGAGGATTCTCATGTGTATATATGGAAAAATGAAGCCTGTTGCAAACCTAACCGGAGCAAAGGCGTCACTGTAACGCAATCATATGAACATTTTCACTGTAAAGATGTTTCAGTGGCGATTCCCTGGCCTGGTATGGGTGACGCTTGGGAAATGCCTGATACTTTCTCTGGAGAACAGACCGTGGATGACAATATTCTGGATGATGTCATGTCCGCCAATCATCCTCCTACCCCGGTGGAGGAAAATTTTGGCACAGATGGTTCGCAATCAGCATCTGGATGCAGCAACAGTCCTCTTCATGGAACAATTGCAAGCACAACAAATGATTACTTCTTTGATAGAATTTCTGCAACATGGCCGGAAGAAAAACTTGTAGTGGCTGCACGGAACCGAACCCCTCAAGTCAGTTTAGATCTCTCCAATGGGGTATGCCAAAACATGTCAGCTTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGGGAAATAAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2733 0.4585 MTRAGDEEEEDECFYESHDRLVSSSCSCSTSNSDDDNDSYSNSPNYGSNQPFPVPKFPVAMSKFDIWISEPSSVLERRTRLLHEMGLSGDPSLSRGKPASAADLREMGNGEFERSASSDHLSRQQAASSSSSTGMFRSKSDGAADRSDLSVSGQSHDRCNKSSFCSSSSILSIHSVAPETGSFVNNCNLVFKSRGVNGNGSPVASAGSLNKPPSGKNCKRVDEIQSESSVDVGHSLVASVSEIAGGEVEEVVDCDGVDSVNEQVCTIRDLDNGKEFVVKEVREDGTWSKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEEGNKDNVDPNVSGGSGEGSKPKKKVGWFKSIKSVASTMAGYKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTGLYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCLIHVWQVVESERKGELLMEKAEDGNMNMLFVVNGSPEPTLLSPARDNHPDKKRRGRSSISRKSLSLDQLVVPETIFALTEKPFCSFQGHHNDVLDLSWSKSQHLLSSSMDKTVRLWHLTSQTCLKVFSHSDFVTCIQFNPVDDRYFISGSLDSKVRIWSIPDHQVVDYTDLHEMVTAACYTSDGQGALVGSYKGSCHLYDTSDNKLQQRSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNPNSPISASLTANGKYVISASEDSHVYIWKNEACCKPNRSKGVTVTQSYEHFHCKDVSVAIPWPGMGDAWEMPDTFSGEQTVDDNILDDVMSANHPPTPVEENFGTDGSQSASGCSNSPLHGTIASTTNDYFFDRISATWPEEKLVVAARNRTPQVSLDLSNGVCQNMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1021 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 536 570 - -
Acco08g1021 910 PANTHER WD REPEAT DOMAIN 44 6 907 IPR040324 -
Acco08g1021 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 576 IPR001680 GO:0005515
Acco08g1021 910 MobiDBLite consensus disorder prediction 487 510 - -
Acco08g1021 910 MobiDBLite consensus disorder prediction 1 54 - -
Acco08g1021 910 MobiDBLite consensus disorder prediction 20 50 - -
Acco08g1021 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 424 465 IPR001680 GO:0005515
Acco08g1021 910 Gene3D - 395 489 IPR015943 GO:0005515
Acco08g1021 910 Gene3D - 515 768 IPR015943 GO:0005515
Acco08g1021 910 MobiDBLite consensus disorder prediction 145 161 - -
Acco08g1021 910 FunFam WD repeat-containing protein 44 517 783 - -
Acco08g1021 910 MobiDBLite consensus disorder prediction 110 161 - -
Acco08g1021 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 618 IPR001680 GO:0005515
Acco08g1021 910 FunFam Transducin/WD40 repeat-like superfamily protein 382 485 - -
Acco08g1021 910 Pfam WD domain, G-beta repeat 531 566 IPR001680 GO:0005515
Acco08g1021 910 Pfam WD domain, G-beta repeat 706 744 IPR001680 GO:0005515
Acco08g1021 910 Pfam WD domain, G-beta repeat 572 609 IPR001680 GO:0005515
Acco08g1021 910 Pfam WD domain, G-beta repeat 423 455 IPR001680 GO:0005515
Acco08g1021 910 SMART WD40_4 570 609 IPR001680 GO:0005515
Acco08g1021 910 SMART WD40_4 529 567 IPR001680 GO:0005515
Acco08g1021 910 SMART WD40_4 703 744 IPR001680 GO:0005515
Acco08g1021 910 SMART WD40_4 417 456 IPR001680 GO:0005515
Acco08g1021 910 SMART WD40_4 611 650 IPR001680 GO:0005515
Acco08g1021 910 SMART WD40_4 663 702 IPR001680 GO:0005515
Acco08g1021 910 MobiDBLite consensus disorder prediction 324 347 - -
Acco08g1021 910 MobiDBLite consensus disorder prediction 363 405 - -
Acco08g1021 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 576 610 - -
Acco08g1021 910 MobiDBLite consensus disorder prediction 119 138 - -
Acco08g1021 910 SUPERFAMILY WD40 repeat-like 419 748 IPR036322 GO:0005515
Acco08g1021 910 PRINTS G protein beta WD-40 repeat signature 443 457 IPR020472 -
Acco08g1021 910 PRINTS G protein beta WD-40 repeat signature 554 568 IPR020472 -
Acco08g1021 910 PRINTS G protein beta WD-40 repeat signature 596 610 IPR020472 -
Acco08g1021 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 424 457 - -
Acco08g1021 910 MobiDBLite consensus disorder prediction 366 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1021 Acco-ChrAcco08 10078691 10084003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1021 523 741 U-box Gene Family AT1G04510 27.197 9.55e-07 50.4