LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco08g1011	ATGACAGACATTGAGGCTCCAACATCTAATGGAGCAGCTTCAGATATTTTGCAGAAGAGGAATCGTCCTGTCACTCTTAAGTTCGAGGATGTTGTGTACAGAATCAAGAACAAGAAACAAGGATTGTCATCATTTTGGAAAAAGGGAAATAAAGAAGAAGAGAAAATAATCCTTAAGGGAGTGAGTGGCATTATTGAACCAGGTGAAGTTTTGGCCATGCTTGGTCCATCTGGGGGTGGCAAAACAACCCTACTAACGGCCTTGGGCGGCCGGCTCGGTGGCGGGAAGCTTCAAGGGACCATAACCTACAATGGCCAAAAGTTCTCCAACTCAATGAAGAGAAACACAGGCTTTGTAACCCAAGACGATGTTCTCTACCCTCACTTGACTGTAACAGAAACCCTAGTTTTCACGGCACTCCTCAGACTTCCCAATAGTTTCACCAAACAAGAGAAGATTTTGCAGGCTGAGAGTGTCATAACACAATTAGGTTTAACCAATTGTAAAGATAGCATAATTGGGCACACTCTTTTGAGAGGTGTTTCTGGTGGGGAGAGGAAGAGGGTTAGCATTGGGCAAGAAATGCTTGTAAACCCTAGCCTGCTTTTCTTGGACGAGCCTACGTCTGGCCTCGACTCAACCACGGCTCAAAGGATCGTGTCGTGTTTGTGGGAGCTAGCAAATAAGGGCAAAACTGTTGTTATGACTATACACCAACCTTCTAGTAGATTGTATTACATGTTTCACAAGGTTATGTTACTATCTGAAGGAAGCTCAGTGTACTTTGGTAAAGGTTCTGAAGCCATCAAGTACTTTTCTAATGTTGGATTTTCCCCAGCTGTTGCCATGAACCCTGCAGACTTCCTCTTGGATCTTGCAAATGGTGTCTACTCAGATGAATCAACAGAAGATCATGGTTTAGTAAAGAGCAAATTGAAATCTGAATACACGAAACACATTGAGCCTCAATTGAAAGAAATGCTTGACTCAAGGGGAGACTCTGGTCAAAGTCATCAGCAAGATAATAAACATCAAGACAGAGAATTTGGGAGATGGCCTACGACTTGGAGCCAGCAATTTTGTGTTTTACTTAGAAGAGGAGTCAAAGAGAGAAGACACGAATCCTTCTCTACCCTCAAGATTTGTCAGATACTCATCGTCGCTATTATCTGTGGACTTTTATGGTACAAGTCTGATATATCACACTTGCAGGATCAAGTGGGGCTTCTGTTCTTCATTGTAGGCTTCTGGGGCTTTGTCCCTATGTTCCAAGCCATCTTCACCTTCCCGCAAGAACTCATGATGCTTCAGAAAGAACGATCTTCAGGAACTTACAGGCTCTCTTCATACTTCATGTCAAGAATGGTTGGTGATCTTCCAATGGAGCTAGTACTTCCCACAATCTTTCTTATCATAACCTATTGGATGGCAAGCTTAAACCCCAACTTCTTAAGCTTCTTTTTCACTCTCCTTAGCCTCTTGTTCACTGTCCTAGTCTCACAAGGCCTAGGCTTAGCCTTAGGTGCTTCTCTCATGGATCAGAAAACAGCAACAACACTTGGTTCTGTGATAATGCTTAGCTTCATGCTAGCTGCTGGGTTTTATGTTCAAAATGTGCCAAAGTTTATAGCTTGGATTAAGTACTTGTCTATTAGTCATTACACTTTCAAGCTCTTTGTCGGATCTCAGTATGGTGTTAGGGACACGTACCCTTGTTCTGAAGGGCATGAGTGTTTGGTTGCGGATTTTCCTTCTATAAAGCAAATTGGGGTTGGTTTGGAAGGACAAATTTTGGCTGCTTTGGCCTTAGGGATAATGCTTGTAGGTTACAGACTTTTGGCTTATTTGGCCCTTATGAGGATTGGGGTCACAAAGAAACTGGGTTAG	1887	0.4293	MTDIEAPTSNGAASDILQKRNRPVTLKFEDVVYRIKNKKQGLSSFWKKGNKEEEKIILKGVSGIIEPGEVLAMLGPSGGGKTTLLTALGGRLGGGKLQGTITYNGQKFSNSMKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNSFTKQEKILQAESVITQLGLTNCKDSIIGHTLLRGVSGGERKRVSIGQEMLVNPSLLFLDEPTSGLDSTTAQRIVSCLWELANKGKTVVMTIHQPSSRLYYMFHKVMLLSEGSSVYFGKGSEAIKYFSNVGFSPAVAMNPADFLLDLANGVYSDESTEDHGLVKSKLKSEYTKHIEPQLKEMLDSRGDSGQSHQQDNKHQDREFGRWPTTWSQQFCVLLRRGVKERRHESFSTLKICQILIVAIICGLLWYKSDISHLQDQVGLLFFIVGFWGFVPMFQAIFTFPQELMMLQKERSSGTYRLSSYFMSRMVGDLPMELVLPTIFLIITYWMASLNPNFLSFFFTLLSLLFTVLVSQGLGLALGASLMDQKTATTLGSVIMLSFMLAAGFYVQNVPKFIAWIKYLSISHYTFKLFVGSQYGVRDTYPCSEGHECLVADFPSIKQIGVGLEGQILAALALGIMLVGYRLLAYLALMRIGVTKKLG	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco08g1011	628	MobiDBLite	consensus disorder prediction	329	348	-	-
	Acco08g1011	628	Pfam	ABC-2 type transporter	238	330	IPR043926	GO:0140359
	Acco08g1011	628	Pfam	ABC transporter	58	209	IPR003439	GO:0005524
	Acco08g1011	628	ProSitePatterns	ABC transporters family signature.	181	195	IPR017871	GO:0005524\|GO:0016887
	Acco08g1011	628	Pfam	ABC-2 type transporter	358	564	IPR013525	GO:0016020\|GO:0140359
	Acco08g1011	628	FunFam	ABC transporter G family member 22	45	275	-	-
	Acco08g1011	628	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	26	281	IPR003439	GO:0005524
	Acco08g1011	628	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	20	615	-	-
	Acco08g1011	628	SMART	AAA_5	67	258	IPR003593	GO:0016887
	Acco08g1011	628	Gene3D	-	43	275	IPR027417	-
	Acco08g1011	628	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	53	273	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco08g1011	Acco-ChrAcco08	9901286	9904702	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco08g1011	65	295	Calmodulin-binding Proteins	AT2G36910	24.686	1.42e-10	62.8