Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0978 ATGGATCCTCGTTACCATGATGAAGTTCGTTTTTTGGTACGACATGAAGATCAAGTTCAAGTTCAATACACATGCAATATTCGTCGACGTGACCTATTTTTACCTTTTGATCATAACTTAGGTACTCCTTATGGCAATCGATACTTTAGAATGAGAATGAACTGTATGAGACATGATAGGCTAGCTCCTAACCCACTCCTTCCTTCATCTGTGTCCATAAATTTCTTAGACGTCCCACAAAATTTGATAGCGCAAAAAGTAAGATCAACTCTTCTTAGTTTTAATATTCCCCGAGATTTTTGCAACTCCATGACAACAAAAATCTTGAATGTTGCGCAAGGTATGGCTAATACTACTTGTAGAAGCTTGGTCGTGGATATTATGGTTGAAACTTTATATCACAACCATGTCCATGAGCATAGCCAAGTTGTGGAGGAATCTATGGAGGATGAACATCAGCGACTTGTTCCTGCGAGGAAAACGTCAATTGAAGAATTGGAAAGAGTGAAGATTGGAGGCGGAAGAGGAGAAAGCGAAGGGCCTGCTAGTTGTTGTTCAATTTGTTTGGAAGATTTTAAAGCCGATGATGAAGCTATTCGCATGCCTTGCGAGCATTTGTTTCATTCGACTTGCATTCTTCATTGGTTGCAACGTCGTAATATTTGTCCCTTGTGTCGCTTTGAATTGCCCCCTGAAGTTGATGATGATTAA 711 0.398 MDPRYHDEVRFLVRHEDQVQVQYTCNIRRRDLFLPFDHNLGTPYGNRYFRMRMNCMRHDRLAPNPLLPSSVSINFLDVPQNLIAQKVRSTLLSFNIPRDFCNSMTTKILNVAQGMANTTCRSLVVDIMVETLYHNHVHEHSQVVEESMEDEHQRLVPARKTSIEELERVKIGGGRGESEGPASCCSICLEDFKADDEAIRMPCEHLFHSTCILHWLQRRNICPLCRFELPPEVDDD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0978 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 233 IPR013083 -
Acco08g0978 236 FunFam E3 ubiquitin-protein ligase RNF181 145 232 - -
Acco08g0978 236 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Acco08g0978 236 SMART ring_2 185 225 IPR001841 -
Acco08g0978 236 Pfam Ring finger domain 185 226 IPR001841 -
Acco08g0978 236 SUPERFAMILY RING/U-box 184 231 - -
Acco08g0978 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 127 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0978 Acco-ChrAcco08 9479552 9480262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0978 152 230 C3H Transcription Factor Family AT1G14200 41.772 5.09e-17 74.3