Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0951 ATGACGATAATACCCATAGGCTTGTACAGAAGAACCCAGGAAATGAATGGCAGAGAAGCAATAAGAGAAAGAGGAAGGAGAAGGAGAAGGACAAAAATGGAGGGTTGTACGCTGTGTGGGAAGAGGGCGAGGATGTACTGTGAATCGGACCAGGCTAGGCTGTGCTGGGACTGCGACGATAAGGTTCACGGTGCCAACTTTCTGGTGGCAAAGCACACAAGGGTTCTTCTCTGCCGTACCTGTCAGTCTTTTACTCCCTGGAAGGCCTGTGGTCCGAAACTCACGCCGACTCATTCCCTCTGCAGCCACTGTGCTTCCGATTCCAACAAGCATCAACTGGTAGAAGATGATCGTGATCATCGTCATCATGATCTCCGTGATATTCCAGATCGCGAAGACGAGGATGATGATGGTGGTGGAGATTCTAGTTCCGATTCCGACTCTGGTTATGAAGATGACGACGAAGAAGACGAGGGAGAGGATGAAGAGGAGGAGGAAGGAGAGAACCAGGTGGTTCCATGGTCTTGCGCTTCTGCTACGGCGTCATCGCCGCCAGTTGCGAGCTCTGCTTCGGCTGGTCCTGGTTTGGCCTGGAAGCGGCGGCGAGCGAGTTCGTTTGTCGATTCCGATGATGAGATCGGTTGCTCTTCTTCTGAAATGCCGTCTGCCACACAATTACCAGACGATGATTCATCTTCTTTGAGTATCCTCAGGCCATGGAAGCACCCTAGAACTACTCAGCAGAGCCAATAA 753 0.5153 MTIIPIGLYRRTQEMNGREAIRERGRRRRRTKMEGCTLCGKRARMYCESDQARLCWDCDDKVHGANFLVAKHTRVLLCRTCQSFTPWKACGPKLTPTHSLCSHCASDSNKHQLVEDDRDHRHHDLRDIPDREDEDDDGGGDSSSDSDSGYEDDDEEDEGEDEEEEEGENQVVPWSCASATASSPPVASSASAGPGLAWKRRRASSFVDSDDEIGCSSSEMPSATQLPDDDSSSLSILRPWKHPRTTQQSQ 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0951 250 ProSiteProfiles Zinc finger B-box type profile. 31 77 IPR000315 GO:0008270
Acco08g0951 250 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 36 227 - -
Acco08g0951 250 MobiDBLite consensus disorder prediction 115 250 - -
Acco08g0951 250 CDD Bbox1_BBX-like 36 77 - -
Acco08g0951 250 SMART bboxneu5 31 77 IPR000315 GO:0008270
Acco08g0951 250 MobiDBLite consensus disorder prediction 115 129 - -
Acco08g0951 250 Pfam B-box zinc finger 35 76 IPR000315 GO:0008270
Acco08g0951 250 MobiDBLite consensus disorder prediction 210 250 - -
Acco08g0951 250 MobiDBLite consensus disorder prediction 130 169 - -
Acco08g0951 250 MobiDBLite consensus disorder prediction 173 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0951 Acco-ChrAcco08 9145686 9146670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0951 36 219 C2C2-CO-like Transcription Factor Family AT4G27310 47.783 2.58e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco08g0951 zf-B_box 1.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3541 01 52011521 52012361 Acco08g0951 08 9145686 9146670 CCT
Acco08g0951 08 9145686 9146670 Acco08g0951 08 9145686 9146670 ECH