Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0909 ATGGATCTTCTCTGCGACGCATACGGCAATGCGTCTGACGATGATCAAGATCAACCGAAACGCCAGAAGCTTGCGCCTTTTTTCTCAAACCCGCCAAAACCCTATCTTCCTCCTCCTATTAACCACTGCTCGCAGCTTCAAACGCAATCTTCGCTTCCTGGCAGATATATTTCCAAGCGACAAAGGGCTCTTTTAGGCGTTAATCCCACTGTTCCCAACCCAGCTCCAGCTCTGGTCTCTCCTTCTGTCGCTTTGTCTGGAAGCATCCTGGATACTGAACTACCACCTAGCATTTTATCATTGTTGAGAAATAAAGCTAGAGGTCAACAAAATCTGAACCTGATACCTGAAAGGCTATCTGTGGCACTATCTGGCCATACAAAAGCTGTCAATGCTATACAATGGTCTCCCACTCATGCTCATCTCCTTGCATCTGCCGGGATGGACCATTTGGTTTGCATTTGGAATGTATGGAGTAGAGATCAAAAGAAAGCACGCGTAATAAACTTCCACAATGCAGCAGTGAAAGATGTGAAATGGTCTCAGCAAGGGCACTCTCTGATTTCTTGTGGATATGATTGCAAATCAAGGTTGATTGATGTAGAAAAGGGGTTTGAGACTCAGGTTTTTAGTGAGGATCAAATTGTTGGGGTTATAAAATTTCATCCAGACAACTCAAACCTCTTTCTTTCTGGTGGTTCAAAAGGCCATATTAGATTATGGGATATCAGGACTGGCAAAGTAGTCCATAGTTTTAATCGCAATTTAGGTCCAATTTTGGATGTTGAGTTTACAATCAGTGGGAAGCAGTTCATTTCTTCTAGTGATGTATCTAGGAGTAATGTCAGTGAGAACTCAATTATTGTTTGGGACGTGTCCAGACAGGTTCCGCTGTCTAGTCAGGTTTATGTTGAAGCTTACACCTGTCCGTGTGTAAGGCGCCACCCATACGAGTCTACTTTTGTTGCCCAGTCAAATGGGAATTACATTGCAATTTTTGCGTCCAACCCCCCTTTCAGGCTAAACAAATACAAGAGGTATGAAAGCCACGGCGTCTCTGGGTTTCCCATAAAGTGCAATTTCAGTTTGGATGGGAAGAGCCTTGCTTCTGGTTCTTCAGATGGTTGTATTTATCTTTACGATTATCAGTCATCTAACGTTGTCCGAAAAATCAAGACGTCTGATCAAGCATGCATAGATGTTGCTTTCCATCCTGTTATACCTAATGCTATTGCTTCATGCTCCTGGGATGGAAGCATCTCGGTATTTGAATAA 1275 0.4322 MDLLCDAYGNASDDDQDQPKRQKLAPFFSNPPKPYLPPPINHCSQLQTQSSLPGRYISKRQRALLGVNPTVPNPAPALVSPSVALSGSILDTELPPSILSLLRNKARGQQNLNLIPERLSVALSGHTKAVNAIQWSPTHAHLLASAGMDHLVCIWNVWSRDQKKARVINFHNAAVKDVKWSQQGHSLISCGYDCKSRLIDVEKGFETQVFSEDQIVGVIKFHPDNSNLFLSGGSKGHIRLWDIRTGKVVHSFNRNLGPILDVEFTISGKQFISSSDVSRSNVSENSIIVWDVSRQVPLSSQVYVEAYTCPCVRRHPYESTFVAQSNGNYIAIFASNPPFRLNKYKRYESHGVSGFPIKCNFSLDGKSLASGSSDGCIYLYDYQSSNVVRKIKTSDQACIDVAFHPVIPNAIASCSWDGSISVFE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0909 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 251 IPR001680 GO:0005515
Acco08g0909 424 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 27 424 - -
Acco08g0909 424 Pfam WD domain, G-beta repeat 347 381 IPR001680 GO:0005515
Acco08g0909 424 Pfam WD domain, G-beta repeat 219 242 IPR001680 GO:0005515
Acco08g0909 424 Pfam WD domain, G-beta repeat 123 156 IPR001680 GO:0005515
Acco08g0909 424 MobiDBLite consensus disorder prediction 8 31 - -
Acco08g0909 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 165 IPR001680 GO:0005515
Acco08g0909 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 157 - -
Acco08g0909 424 ProSitePatterns Trp-Asp (WD) repeats signature. 143 157 IPR019775 -
Acco08g0909 424 Gene3D - 102 424 IPR015943 GO:0005515
Acco08g0909 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 247 - -
Acco08g0909 424 SUPERFAMILY WD40 repeat-like 110 423 IPR036322 GO:0005515
Acco08g0909 424 SMART WD40_4 203 242 IPR001680 GO:0005515
Acco08g0909 424 SMART WD40_4 161 200 IPR001680 GO:0005515
Acco08g0909 424 SMART WD40_4 116 156 IPR001680 GO:0005515
Acco08g0909 424 SMART WD40_4 342 381 IPR001680 GO:0005515
Acco08g0909 424 SMART WD40_4 245 291 IPR001680 GO:0005515
Acco08g0909 424 SMART WD40_4 384 424 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0909 Acco-ChrAcco08 8380805 8385252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0909 126 371 Miscellaneous Gene Families AT5G08390 21.116 3.35e-08 53.9