Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0868 ATGGTTTCCCCGGAAAATTCCAATTGGTTTTTCGATTATGGTCTGATTGACGACATATCCGTCCCTGATGGGAACTTCAGTGTCCATGCCTCCGGGTTTACCTGGCCGGCGCAGGCCTTGAATGGTTCTTCAAATGTCAGCACGGATATTGATGGCTCATTGGGGGATTCTGATGTTCTCAAAGAGTCTGGATCGAAGAAGAGGAGAAGATCTGATTCGTGTACTGCTTCCAGCTCAAAAGCATGTCGTGAGAAATTGCGGAGGGATAGGCTGAATGACAAGTTTCTTGAATTGGGCTCCACTTTGGAGCCTGGAAAGCCTCCCAAAACAGACAAAGCTGCCATTTTGATCGACGCTGCGCGAATGGTGACACAATTACGGGGTGAGGCCCAGAAGTTGAAGGATTCAAATGCCAGTCTTCAAGAGAAGATAAAAGAGTTGAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAAAGGCTCAAGGGAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAAACTATCAATTTACAGCCTGGTTTCTTGCCTACCCCGCCTGCAATTCCTGCTGCATATGCGGCAGCACAAGGCCAAGCCCCTGGCAACAAGTTGTTTCCGTTTATCAGTTATCCAGGAGTCGCCATGTGGCAATTTATGCCACCAGCTGCAGTGGATACTTCACAGGATCATGTACTCCGTCCACCAGTTGCATAA 714 0.479 MVSPENSNWFFDYGLIDDISVPDGNFSVHASGFTWPAQALNGSSNVSTDIDGSLGDSDVLKESGSKKRRRSDSCTASSSKACREKLRRDRLNDKFLELGSTLEPGKPPKTDKAAILIDAARMVTQLRGEAQKLKDSNASLQEKIKELKAEKNELRDEKQRLKGEKEKLEQQLKTINLQPGFLPTPPAIPAAYAAAQGQAPGNKLFPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0868 237 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Acco08g0868 237 Gene3D - 78 154 IPR036638 GO:0046983
Acco08g0868 237 FunFam Transcription factor bHLH34 66 124 - -
Acco08g0868 237 MobiDBLite consensus disorder prediction 51 81 - -
Acco08g0868 237 SMART finulus 81 132 IPR011598 GO:0046983
Acco08g0868 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Acco08g0868 237 PANTHER BHLH TRANSCRIPTION FACTOR 4 237 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Acco08g0868 237 CDD bHLH_AtILR3_like 80 155 - -
Acco08g0868 237 Coils Coil 123 178 - -
Acco08g0868 237 MobiDBLite consensus disorder prediction 60 74 - -
Acco08g0868 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 146 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0868 Acco-ChrAcco08 7878695 7881083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0868 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.385 1.63e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco08g0868 HLH 6.8e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g0868 08 7878695 7881083 Acco08g0868 08 7878695 7881083 ECH