Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0844 ATGTCCCAGTCTCCCAGACGCCCCCAGAAAATTCCTTACCAGAAAAATATGAGCAGTGGATTGCAAGATATGTCCTCCAGTCCACTTCAGAATGTTACCTATGTTCCTGCTTCTGTGGACTGGAGGCAAAAAGGTTGTGAGGAAGGTACAATAGAAGATGGCTATGAATATATCATTAACAATGGAGGAATTACAACTGAGACAAACTACCCCTACAAGGGGGTTGAAGGCACTTGTGACACTGAAAAAGAAGCCTCCCATGTAGCAAAGATTAAGGGCTATGGGAAAGTACCTGCCGATAATGAGGAGGTGCTGTTGAAGGCGGTAGCCGGCCAACCTGTGTCGGCTGCCATTGATGCCTCAGGATCTGCTTTCCAATTTTACTTAGTGGAGGCCATTTTGGTAAACAAGAAATATAAATCTGGCACCAATTACTTCAAAGCCCACGCGCACCGATTTCTATCTCCGCTGAGCTCATTCCGGAAGATTTCTCTCTCCCCGCAGGGTTTTAGCTCCAATTTCTTTAAACCCGAAGACATGGCGGCGGCGATGAGAGCGGCAGTGGCGGCGCCTCGCGGTCTAAGGCGGCTATTCTCAACCACTACAACTTCAACCTTCATGCCTCCTCCTCCGACGTCGCCGGGGGCTCCTGGTCGAGAGAAGGCGGAGCCCAGTCCCAATCTCTTCGTCTCTGGGCTTAGCAAGCGTACTACTACTGAAAAGCTGCGTGAGGCATTTTCCCAGTTTGGTGAAGTTGTTAATGCTAGAGTGGTAACTGACAGAGTATCAGGTTACTCTAAGGGGTTTGGCTTTGTAAGATATGCTACCATAGAAGAAGCTGCAAAAGGCATTGAGGGCATGGATGGAAAGTTTCTGGATGGTTGGGTTATATTTGCAGAGTATGCGAAACCAAGACCACCACTAGGACAACCTGGACAACCCATGCCTCCTCCGTATGGCCAGCATTAA 969 0.4881 MSQSPRRPQKIPYQKNMSSGLQDMSSSPLQNVTYVPASVDWRQKGCEEGTIEDGYEYIINNGGITTETNYPYKGVEGTCDTEKEASHVAKIKGYGKVPADNEEVLLKAVAGQPVSAAIDASGSAFQFYLVEAILVNKKYKSGTNYFKAHAHRFLSPLSSFRKISLSPQGFSSNFFKPEDMAAAMRAAVAAPRGLRRLFSTTTTSTFMPPPPTSPGAPGREKAEPSPNLFVSGLSKRTTTEKLREAFSQFGEVVNARVVTDRVSGYSKGFGFVRYATIEEAAKGIEGMDGKFLDGWVIFAEYAKPRPPLGQPGQPMPPPYGQH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0844 322 PANTHER NUCLEOLAR PROTEIN 8 207 316 - -
Acco08g0844 322 Pfam Papain family cysteine protease 42 129 IPR000668 GO:0006508|GO:0008234
Acco08g0844 322 SUPERFAMILY RNA-binding domain, RBD 206 319 IPR035979 GO:0003676
Acco08g0844 322 MobiDBLite consensus disorder prediction 1 27 - -
Acco08g0844 322 Gene3D Cysteine proteinases 13 152 - -
Acco08g0844 322 SMART rrm1_1 227 300 IPR000504 GO:0003723
Acco08g0844 322 SUPERFAMILY Cysteine proteinases 30 128 IPR038765 -
Acco08g0844 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 304 IPR000504 GO:0003723
Acco08g0844 322 MobiDBLite consensus disorder prediction 201 228 - -
Acco08g0844 322 FunFam RNA recognition motif-containing protein 204 315 - -
Acco08g0844 322 Gene3D - 206 310 IPR012677 -
Acco08g0844 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 294 IPR000504 GO:0003723
Acco08g0844 322 SMART pept_c1 35 157 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0844 Acco-ChrAcco08 7578051 7583674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0844 173 321 Eukaryotic Initiation Factors Gene Family AT3G16380 28.846 3.34e-11 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g0844 08 7578051 7583674 Acco08g0844 08 7578051 7583674 ECH