Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0819 ATGTCGCAGACTGAGAAGTCGATGCAGGCATTGGGGTTTGATTCTCTCACTTCTCGATTTCGCGATTTGTTGGATTCTGACGAAAACAAGCCTGATTTTAAAGAACTAGATCTAGGTTCTCCTGTTTCTCCATTGAAAACCATTGCCTCTGTTAATGCTGCCGGCGCCTGCGCTTCTAACACCTCCAGCTGCAGCTCGACCTCCTCTGCTGGCTCGGTTTCCAGCAGCAGAAATACTGTCGACAAGTTGCCCAGTAAAACAGACGCGAAGCCCAGGAACAACTGCGGCGAGCTCCGTGAGACCAACTCAAACGCCTCCGAGAGCCTCCAATCGGCTTTGGCATGCCGACGCACCAAGCCTGGTCATAGAAGATCGGTTTCAGCTGGAGCCCCATTAATATACTCCGGTGGAAGTTCTAGCAGCTTGGGGAATAACAGTAATTCAAATGGTGCAAATTCAGGGACTCATTTTCTCCCAACCGGCAATATTTGTCCGAAAGGGAGGATCTCAAAAACCGGTTTGGCGCCTAAAACGCCCAATAGAACTGATGTTTTGGGTTCAGGGACGGTAAACTACGGCCGAGGCAACATAATGCGCGGTGGCGGGAAATTGGGCAATGGAGGGCACGCAATAGTCGATGACAATGTCGCGGGAAATTCTCAGCTCGGAGGGGTGTCGGGCATTGTGAAACAGGCGATGAGTGGTTCGGATCCTGAGGAAGTGAAAAAAGCCGGAAATGAGCTATATAGAAGCGGTTACTTTGCGGAGGCATTGTCGTTGTACGATCGCGCAATTTCCATATCACCCAATAATCCTGCCTACCGGAGTAATCGGGCGGCAGCGTTGACGGCGGTGGGGAAGTTGGCTGCGGCGGCGAAGGAGTGCGAAGAGGCTGTGAAATTGGACCCTGGTTATGCCAGGGCTCATCAGAGACTGGCTTCACTTTATTTGCGCTTTGGGCAGGTTGAGAATGCGCAAAGCCATCTGTGTGTCCCTGGAAAACAGGTGGATCAATCTGAACTGTACAAGTTGAAGCTCTTGGAGAAGCATTTGAAAAGATGTGCAGAAACACGAAAGATTGGTGATTGGAAGAACACACTAAGGGAATCAGACGCAGCCATTGGTGTCGGAGCAGATTTCTCGCCCCAGCTTGTTGCTTGCAAAGCTGAAGCCTATTTGAAACTTCATCTACTTGAGGACGCCGAGTCTACCCTCTCAAACATTCCTAAGCTGGAGGGTTGCTCTCAAACCAAGTTCTTTGGTATGATTGGGGAAGCTTATGTTCCCTTTGTTCGAGCTCAGGTTGAGATGGCCTTAGGAAGGTTTGAGAATGCAGTAGCAGAAGCAGAAAAGGCTAGTTTGATGGATTATAGCAATGTGGAAGTTGCGAGGGTAGTAAATACTGTGAAAATAGTGGCAAGGGCTCGCTCTCGAGGCAATGATCTTTTTGGCCATGGAAAATTTTCTGAAGCTTGCTCTGCTTATGGAGAAGGACTTAAATATGATAATTCCAACTATGTTTTGTTCTGCAATAGAGCTGTTTGCTGGTCTAAACTTGGAATGTGGGAAAAGTCTGTTGAGGACTGCAACCATGCTCTGCTAATACTACCAAACTGCACCAAGGCCCTTCTCCGTAGGGCTGTCTCAAATTCCAAGCTTGAAAGGTGGGGAGATGCTATAAGAGATTATGAGGCATTAAAGCGTGAACTTCCTGGAGATAGTGTAGTTGCTGAGTCCCTCCATCAGGCTCAGCTTGCATTAAGGAAATCTTGTGGCCAAGATTGTGGTTCAAAACTTGTTCTTGAGTTTGAAGAGGTCTATACATTAGATAGATTAAAAGCCGCAATTGCTTCTTCCGGTATCTCAATGGTTCATTTCAAGAAGGCATCTAATGAACAAGGTCAAGACATATCCCTGTTCATAAATACGCTCTGCATTAGATACCCATATGTTAAATTCATCAAGGTGGATGTGGAAGAGTGTACAAGTATAGCAAAAGCTGAGAGCATAAGAGCTGTGCCAACTTTCAGAATCTATGCAAATGGAGAGAAGGTGATGGAGATGATCAGGCCAAGCCGTCAGTTGTTGGAGGACTCTGTGAGGAACTGTTGTAATCTCTAG 2121 0.4729 MSQTEKSMQALGFDSLTSRFRDLLDSDENKPDFKELDLGSPVSPLKTIASVNAAGACASNTSSCSSTSSAGSVSSSRNTVDKLPSKTDAKPRNNCGELRETNSNASESLQSALACRRTKPGHRRSVSAGAPLIYSGGSSSSLGNNSNSNGANSGTHFLPTGNICPKGRISKTGLAPKTPNRTDVLGSGTVNYGRGNIMRGGGKLGNGGHAIVDDNVAGNSQLGGVSGIVKQAMSGSDPEEVKKAGNELYRSGYFAEALSLYDRAISISPNNPAYRSNRAAALTAVGKLAAAAKECEEAVKLDPGYARAHQRLASLYLRFGQVENAQSHLCVPGKQVDQSELYKLKLLEKHLKRCAETRKIGDWKNTLRESDAAIGVGADFSPQLVACKAEAYLKLHLLEDAESTLSNIPKLEGCSQTKFFGMIGEAYVPFVRAQVEMALGRFENAVAEAEKASLMDYSNVEVARVVNTVKIVARARSRGNDLFGHGKFSEACSAYGEGLKYDNSNYVLFCNRAVCWSKLGMWEKSVEDCNHALLILPNCTKALLRRAVSNSKLERWGDAIRDYEALKRELPGDSVVAESLHQAQLALRKSCGQDCGSKLVLEFEEVYTLDRLKAAIASSGISMVHFKKASNEQGQDISLFINTLCIRYPYVKFIKVDVEECTSIAKAESIRAVPTFRIYANGEKVMEMIRPSRQLLEDSVRNCCNL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0819 706 Pfam Thioredoxin 640 690 IPR013766 -
Acco08g0819 706 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 25 701 IPR044534 -
Acco08g0819 706 FunFam TPR repeat-containing thioredoxin TTL4 599 704 - -
Acco08g0819 706 Gene3D Tetratricopeptide repeat domain 236 591 IPR011990 GO:0005515
Acco08g0819 706 Gene3D Glutaredoxin 597 703 - -
Acco08g0819 706 SMART tpr_5 540 573 IPR019734 GO:0005515
Acco08g0819 706 SMART tpr_5 272 305 IPR019734 GO:0005515
Acco08g0819 706 SMART tpr_5 426 459 IPR019734 GO:0005515
Acco08g0819 706 SMART tpr_5 506 539 IPR019734 GO:0005515
Acco08g0819 706 SMART tpr_5 238 271 IPR019734 GO:0005515
Acco08g0819 706 SMART tpr_5 472 505 IPR019734 GO:0005515
Acco08g0819 706 SUPERFAMILY Thioredoxin-like 601 694 IPR036249 -
Acco08g0819 706 Pfam TPR repeat 245 283 - -
Acco08g0819 706 MobiDBLite consensus disorder prediction 96 113 - -
Acco08g0819 706 Coils Coil 432 452 - -
Acco08g0819 706 MobiDBLite consensus disorder prediction 132 159 - -
Acco08g0819 706 SUPERFAMILY TPR-like 477 588 IPR011990 GO:0005515
Acco08g0819 706 MobiDBLite consensus disorder prediction 59 82 - -
Acco08g0819 706 CDD TRX_family 612 697 - -
Acco08g0819 706 SUPERFAMILY TPR-like 237 460 IPR011990 GO:0005515
Acco08g0819 706 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515
Acco08g0819 706 MobiDBLite consensus disorder prediction 59 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0819 Acco-ChrAcco08 7288389 7291527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0819 239 329 U-box Gene Family AT3G07370 29.670 2.38e-06 48.1