Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0795 ATGCAAGGAAATAAGAACGAGAGAGGACAACATGGAGCATGTGCAGCATGCAAGCACCAGAGAAAGAAGTGCCGTGAGAACTGTGTGTTGGCTCCATATTTTCCGGCAAAAAAGAACGAAGAGTTCCAAGCAGTTCACAAAGTGTTCGGAGTGAGCAACTTGATCAAGTTAGTGAAACGCGTAAGAAAAGAGCATCGAAAAACTTTGGTGGAGTCCCTCATATGGGAGGCAAAATGCAGGCTACAAGATCCAGTTCTGGGTTCTTCTGCATTCAAGATAATGTACGATCACCTCCGGCAACAGATTCATCGTAATCATAATCAGAATCATTACCAGATACTGCAGCTACCGTTACCTCATCATCAACTTCATCAACAACAAGACTTGAAGAACTTTCAGAATCACTTAGTGGTTAATGGAGAAAGTTCATCAGTTGAGGATGGGAGAGAATTTATTCATCCAAATAATAAGAATAACATGAATGTGGTTCCTGCTTTGTATGGATCAGACTCCTCATCACAAATTTCCAGTTTGAATACGTTTCAGCAAAACCATCTGCCCAAGTACCATTTTTCAGGCTGCTTCGATACTATATTAAGTCTATCAGGAATGGTGATTGGAGCAACAAAGCACTGGAAACTATTTTTTCATTTCAGTCCTCTTCTGAAACAAAATCATTCAATTCCCTCAGTGTTATCATCACAAAAGCTTGAGCAGGTTGTTAGAGCTGAAGTAGAAGCTAAAAACTATGAGAAAATACCTGACCTTCTCACTTCCTCGGAGTCCTGTCCAAATCCAAATCCAAACCCTTTTTCTTTCTTTTCTACGTTTCCCGAAAACACGAGAGTGCAAATTATTGATGAAATGTTGCAATCATTCATACCTCTTAGACCTCGCTCTAAGCCTCAGATAGCCTATTCATATCTCCTTTCATATACTCTTGAAAGCTCCGATCACCTCCCTCTTGCTCTTGCTATTCTACAACGGACTCTTCGTTCTGGTTGCTTTCCTGTTCCTCAAACCCATGTTCTCCTCACATCTGCTTGGTTGAACAAACGACAGCAATGTCATTCTGTTTCTAACATTTTGCTTCAGATGCAGTCAATCGGATATCAACCTGATTGCAAGACTTGTAATTATCTACTATCATCACTATGTGCTGTTGATCAGTGGATGGAGGCAGTTAAAGTCCTGAAAGGCATGAGTGGAGCAGGATGCTTTCCTGATCATGAGAGTTACGCCATTGTGATTGGAGCAATGTGCAGAGTAAGAAGGACTGCCGAGGCATGGGACTTGATGAAGCACATGGTGGGTAAATGCGGACTGACACCAGGACAGGGAACACTAATGAAATTGTTCGCGGCATTACGGGCAAATAGGGAGATATGGAAAGCAGTTGAGATGATTGAGTTCCTGGAGAGTCAGGGTTACACTGTCGGATTTGAGAGTTATGAGATGGTGATTGAAGGGTGCTTGGAGAAAGCTGAGTATGTTTTGGCTGGAAAGGTTGCAATGAGGATGACAGAAAGAGGTTTTATACCATATATCAAGGTCAGGCTTAAGATAATTGAAGGTTTGGCCAGTATTGGTGAGTGGCAAATAGCTTCTGCTGTGAGACAGAGATTTGCTTACCTTGGATCTTAG 1644 0.4197 MQGNKNERGQHGACAACKHQRKKCRENCVLAPYFPAKKNEEFQAVHKVFGVSNLIKLVKRVRKEHRKTLVESLIWEAKCRLQDPVLGSSAFKIMYDHLRQQIHRNHNQNHYQILQLPLPHHQLHQQQDLKNFQNHLVVNGESSSVEDGREFIHPNNKNNMNVVPALYGSDSSSQISSLNTFQQNHLPKYHFSGCFDTILSLSGMVIGATKHWKLFFHFSPLLKQNHSIPSVLSSQKLEQVVRAEVEAKNYEKIPDLLTSSESCPNPNPNPFSFFSTFPENTRVQIIDEMLQSFIPLRPRSKPQIAYSYLLSYTLESSDHLPLALAILQRTLRSGCFPVPQTHVLLTSAWLNKRQQCHSVSNILLQMQSIGYQPDCKTCNYLLSSLCAVDQWMEAVKVLKGMSGAGCFPDHESYAIVIGAMCRVRRTAEAWDLMKHMVGKCGLTPGQGTLMKLFAALRANREIWKAVEMIEFLESQGYTVGFESYEMVIEGCLEKAEYVLAGKVAMRMTERGFIPYIKVRLKIIEGLASIGEWQIASAVRQRFAYLGS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0795 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 444 IPR002885 -
Acco08g0795 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Acco08g0795 547 Gene3D Tetratricopeptide repeat domain 313 487 IPR011990 GO:0005515
Acco08g0795 547 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Acco08g0795 547 Pfam Lateral organ boundaries (LOB) domain 13 105 IPR004883 -
Acco08g0795 547 Pfam PPR repeat family 373 422 IPR002885 -
Acco08g0795 547 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 126 - -
Acco08g0795 547 NCBIfam pentatricopeptide repeat 377 409 IPR002885 -
Acco08g0795 547 NCBIfam pentatricopeptide repeat 412 444 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0795 Acco-ChrAcco08 7096262 7102093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0795 11 88 AS2 family AT1G06280 66.667 2.24e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco08g0795 LOB 2.1e-31 No_clan