Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0794 ATGAGCACTGCGAGGTTCATTAAGTGTGTTACAGTTGGTGATGGAGCTGTGGGAAAGACCTGTATGCTTATATCTTACACCAGCAATACTTTCCCCACGGATTATGTGCCTACGGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGCAGCACTGTTAACCTTGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTAAGGCCTTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCCTTTTCCCTCATCAGCAAAGCCAGCTATGAAAATATAGCTAAAAAGTGGATTCCTGAGCTAAGACACTATGCTTCAACTGTGCCTGTTGTGCTTGTGGGCACCAAACTTGATTTGCGAGATGACAGGCAATATTTGATCGATCATCCTGGCGCTACTCCGATAACTACTGCCCAGGGAGAAGAACTGAAGAAGGCAATTGGTGCTGCTGTCTACATAGAATGCAGCTCAAAAACCCAGCAGAATGTGAAGGCTGTATTTGATGCTGCGATCAAGGTTGTTTTGCAGCCACCTAAGCCAAAGAAAAAGCGAAAGAAGAACAAAACATTTCTTGAGATTGAGATGTGTCGAAAAGAATGGAAAATGTCAATATGGCCCCTAGAAAATGAGTTCATTCGTGCAATGAGAAACTTCGCCACTCTCTCTTTGGGAGAAATGGCGGGACCTATTCTTCGTTCTCTCTGGTCCTTTACCAGAAAATCTTTTTCCTCTTCCCCATCCCTTTTCACCCCATATCATTTATCGCCGCGTATCAACACCGGCTACCGCCCCTTCTCCGCCGCCCCAGCTACCACCGCCGTGGAACCTAGCAGCGCCCTCAACCCCGGCCGCCTCCGCAACGTTGCCGTGATTGCTCATGTTGACCATGGCAAGACCACCCTCATGGATCGACTACTTCGTCAGTGTGGCGCCGACATACCCCACGAGCGCGCCATGGATTCCATCAGTCTGGAGCGCGAGCGTGGTATCACGATCGCTTCCAAGGTTACTTCGGTTTCATGGAAGGAAAATGAGCTAAATATGGTTGATACGCCTGGACATGCAGATTTTGGTGGTGAAGTTGAACGAGTTGTTGGTATGGTCGAGGGAGCTGTATTGGTTGTAGATGCTGGTGAAGGCCCACTTGCACAGACAAAATTTGTTTTGGCAAAAGCCTTAAAGTATGGGTTACGACCGCTTCTTCTTTTGAACAAAGTAGACCGACCTTCAGTCTCAGAGGAGAGGTGTAATGAAGTTGAGAGTCTGGTATTTGATCTTTTTGCCAACCTTGGTGCAACAGAGGAGCAATTAGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGGTGGGCATCCGCCACCTTTACCAAGGATCCTCCTGCTGAGGCAAAAAATATGTCACAACTTCTTGATGCCATAGTAACTCACGTCCCACCACCAGAAGCAAATATTGACGCGCCTTTCCAAATGCTGGTTTCGATGATGGAACGGGATTTCTATCTTGGGCGAATTTTGACTGGACGTATTCATTCTGGGATTGTTCGTATAGGTGACAAGGTTCATGGTCTATCTAACAAAGATTCTGGAGTAGTGAAGATTGATGATGGAAAGGTTGTGAAATTAATGAAAAAGAAGGGTACAAGCATGGTTCCAATTGACTGTGCTGGAGCTGGTGATATTATTTCAATGGCTGGGTTGGCAAGTCCAATTATAGGCAACACTGTAGCAACTGCAGAGATTATGTCTGCATTACCCACAATTGTGCTGGATCCTCCAACAATTTCCATGACTTTTGGTGTAAATGACTCTCCTTTAGCTGGTCGTGATGGTACTCATTTGACTGGAGGAAAAATTGGTGATCGACTGATGGCTGAAGCTGAAACAAACATTGCCATAAATGTGCTTCCAGGCTTATCAGAGTCATATGAAGTTCAGGGAAGAGGAGAGCTACAATTGGGCATCCTTATTGAGAATATGAGGCGTGAAGGATTTGAGTTGTCTGTCTCTCCACCTAAAGTCATGTATAAAACTGAAAGTGGTGAGAAACTTGAGCCGATTGAAGAAGTTACAATTGAAGTAAATGATGAACACGTTGGGTTAGTTATGGAGGCCTTATCTCATAGGCGAGCTGAAGTTATGGACATGGGTCCTGTTGCAGGAACTGTTGGTCGGACTAGATTGTCTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTATAGGAGTGTGTTCAGCAGTGACACGCGTGGAACTGGCTTCATGCACCGTGCTTTCCTTAAGTATGAAAAATTCCGAGGTCCTCTTGGCAATGTCAGGAAAGGAGTATTGGTATCAATGGGTTATGGTACAATTAGAGCTTATGCATTAATGAGCTTAGAAGCTCGTGGGACTTTATTTATAACCCCAGGATTGGAGACATACGATGGAATGATTATTGGTGAACACTCACGAGATACAGATCTTGACGTCAATCCAGTGAGAGCTAAGGAACTTACAAATATTCGTTCTGCAGGCAGTGATGAAAATATCAAGCTGTCTCCGCCTTGCCTTATGACCCTGGAAGAAGCTATAGGATATGTAGCTTCAGATGAACTTATCGAGGTTACTCCAAAGGCTATACGGCTGAGGAAGAAATATCTTGATGTTAACAAGCGTAAAAGCATGAGTAAAAAGCCAAAGGAATGA 2691 0.4511 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYASTVPVVLVGTKLDLRDDRQYLIDHPGATPITTAQGEELKKAIGAAVYIECSSKTQQNVKAVFDAAIKVVLQPPKPKKKRKKNKTFLEIEMCRKEWKMSIWPLENEFIRAMRNFATLSLGEMAGPILRSLWSFTRKSFSSSPSLFTPYHLSPRINTGYRPFSAAPATTAVEPSSALNPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPLLLLNKVDRPSVSEERCNEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASATFTKDPPAEAKNMSQLLDAIVTHVPPPEANIDAPFQMLVSMMERDFYLGRILTGRIHSGIVRIGDKVHGLSNKDSGVVKIDDGKVVKLMKKKGTSMVPIDCAGAGDIISMAGLASPIIGNTVATAEIMSALPTIVLDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNIAINVLPGLSESYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTESGEKLEPIEEVTIEVNDEHVGLVMEALSHRRAEVMDMGPVAGTVGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLKYEKFRGPLGNVRKGVLVSMGYGTIRAYALMSLEARGTLFITPGLETYDGMIIGEHSRDTDLDVNPVRAKELTNIRSAGSDENIKLSPPCLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKSMSKKPKE 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0794 896 Gene3D Translation factors 485 589 - -
Acco08g0794 896 SUPERFAMILY EF-G C-terminal domain-like 687 803 IPR035647 -
Acco08g0794 896 SMART rab_sub_5 7 180 - -
Acco08g0794 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 493 IPR027417 -
Acco08g0794 896 FunFam Elongation factor family protein 485 589 - -
Acco08g0794 896 Pfam Elongation factor Tu GTP binding domain 287 481 IPR000795 GO:0003924|GO:0005525
Acco08g0794 896 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 284 457 - -
Acco08g0794 896 Gene3D - 5 192 IPR027417 -
Acco08g0794 896 CDD BipA_TypA_C 687 767 IPR035651 -
Acco08g0794 896 PRINTS Transforming protein P21 ras signature 109 122 - -
Acco08g0794 896 PRINTS Transforming protein P21 ras signature 30 46 - -
Acco08g0794 896 PRINTS Transforming protein P21 ras signature 7 28 - -
Acco08g0794 896 PRINTS Transforming protein P21 ras signature 155 177 - -
Acco08g0794 896 PRINTS Transforming protein P21 ras signature 47 69 - -
Acco08g0794 896 FunFam GTP-binding protein TypA 287 484 - -
Acco08g0794 896 SUPERFAMILY EF-G C-terminal domain-like 593 676 IPR035647 -
Acco08g0794 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Acco08g0794 896 Gene3D - 678 772 - -
Acco08g0794 896 CDD TypA_BipA 288 483 IPR047041 -
Acco08g0794 896 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Acco08g0794 896 CDD Rop_like 6 178 - -
Acco08g0794 896 CDD BipA_III 595 672 IPR047043 -
Acco08g0794 896 NCBIfam small GTP-binding protein domain 289 428 IPR005225 GO:0005525
Acco08g0794 896 NCBIfam small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Acco08g0794 896 Gene3D Elongation Factor G (Translational Gtpase), domain 3 596 880 - -
Acco08g0794 896 SMART ras_sub_4 4 180 - -
Acco08g0794 896 FunFam GTP-binding protein TypA 773 859 - -
Acco08g0794 896 Gene3D bipa protein 773 888 IPR042116 -
Acco08g0794 896 FunFam GTP-binding protein TypA 678 772 - -
Acco08g0794 896 Pfam Elongation factor Tu domain 2 505 578 IPR004161 GO:0005525
Acco08g0794 896 Pfam Elongation factor G C-terminus 685 768 IPR000640 -
Acco08g0794 896 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 286 484 IPR000795 GO:0003924|GO:0005525
Acco08g0794 896 ProSiteProfiles small GTPase Rab1 family profile. 2 216 - -
Acco08g0794 896 ProSiteProfiles small GTPase Ras family profile. 2 234 IPR001806 GO:0003924|GO:0005525
Acco08g0794 896 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 323 338 IPR031157 -
Acco08g0794 896 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Acco08g0794 896 Gene3D - 286 484 IPR027417 -
Acco08g0794 896 SUPERFAMILY Translation proteins 433 589 IPR009000 -
Acco08g0794 896 FunFam rac-like GTP-binding protein RAC2 5 193 - -
Acco08g0794 896 NCBIfam translational GTPase TypA/BipA 288 888 IPR006298 GO:0003924|GO:0005525
Acco08g0794 896 CDD BipA_TypA_II 491 588 IPR047042 -
Acco08g0794 896 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Acco08g0794 896 FunFam GTP-binding protein TypA 596 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0794 Acco-ChrAcco08 7075585 7087794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0794 287 411 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 5.95e-25 110