Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0761 ATGGCTTCGTTGTTCAAGGATTTATCCAAGCTTTCAGCCTATCGAGATAGAAAATTTCCGGGAACACAAGAGGAATTTGAGCACGCGCTCCTGACTTCAACGACTGTTTATGTGGGAAATATGTCGTTTTATACAACAGAAGAGCAAGTTTATGAACTTTTTGCTCGATCCGGAGAAATCAAGAAAATTATCATGGGATTGGATAAAAACTCGAAAACTCCCTGTGGCTTTTGTTTTGTTTTATACTACTCTCGGGAAGATACTGAAGATGCTGTCAAATACATAAGTGGGACAATACTTGATGATCGTCCTATCCGTGTAGATTTTGACTGGGGATTCCAGGATGGAAGACAATGGGGTCGTGGTCGTACTGGTGGTCAGGTGCGTGATGAATATCGGACTGATTATGATCCTGATATCCTTTTAGATGTTAAATTTTTATTGAATTGCAATTTTCTTGCCTATAATGAAAGTGACATTGTTCAGAAAGAGTTGGAGGCACAAAGGCAGCTTGTTGATTATGGTGCTGGTTCCTTGGGCTCTTTTCCACCAGTTTTGCCACCATCCTATGGCAGACATGGTGGTTCTCATCGGTATAGTAGAGATTACCACAGGAAGAGACACAGAGATGACGATCGCCATGCCTACGAGTCCTCAAAAAGATCTTCAGATCATGAATCTCGGAGAAACTCTGATCACGACTCTAGACCGGAAAAGAATCCACGATTTCGTGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATAGAAAAAGATCTTAG 783 0.4163 MASLFKDLSKLSAYRDRKFPGTQEEFEHALLTSTTVYVGNMSFYTTEEQVYELFARSGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRTGGQVRDEYRTDYDPDILLDVKFLLNCNFLAYNESDIVQKELEAQRQLVDYGAGSLGSFPPVLPPSYGRHGGSHRYSRDYHRKRHRDDDRHAYESSKRSSDHESRRNSDHDSRPEKNPRFRESGDSDDDEEDDRKRS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0761 260 MobiDBLite consensus disorder prediction 205 260 - -
Acco08g0761 260 FunFam Nuclear cap-binding protein subunit 2 4 141 - -
Acco08g0761 260 SUPERFAMILY RNA-binding domain, RBD 29 137 IPR035979 GO:0003676
Acco08g0761 260 MobiDBLite consensus disorder prediction 185 260 - -
Acco08g0761 260 CDD RRM_NCBP2 36 113 IPR034148 -
Acco08g0761 260 SMART rrm1_1 35 108 IPR000504 GO:0003723
Acco08g0761 260 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 139 IPR027157 GO:0000339|GO:0005846|GO:0045292
Acco08g0761 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Acco08g0761 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Acco08g0761 260 Gene3D - 6 140 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0761 Acco-ChrAcco08 6757387 6761344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0761 35 109 Eukaryotic Initiation Factors Gene Family AT3G11400 32.000 3.19e-06 45.8