LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco08g0758	ATGACTGTGAAGGAAAAGCTCGGAATCAAGCACACTAAGCCAAACATTGCCAAGGAGGTTCACTACAGGGGAGTTCGCAAGAGGCCGTGGGGCCGTTACGCCGCCGAAATACGAGATCCCGGCAAGAAGAGTCGCGTTTGGCTGGGGACATTCGACACGGCCGAGGAAGCCGCAAGAGCCTACGACACCGCCGCCCGGCAATTCCGTGGCCAGAAGGCTAAGACTAACTTTCCTCTGCCCAACGAAAGCGGCCTCAACGGAAATAAACAGAGCCCAAGCGAGACTAGCACCGTGGAGTCGTCATCCAGCCGAGGCGCCCCAGAGCGTGAGATAACGCGCCGCTGCGACGTTGGCGTTGTCGTGGATCGGTTCCCGTTTCTTCCGATTCAGCCACACCACATGGCGTTTGGTTGCGGCGGCGGCGGCGGTGTGGCGGGTTTCGCGCCGGCCGTGCGTCCGGTTTTCTTTTTTGAACAGGCTGCAGGTGGCAGGGCCGAGTTTGTTGCTCAGCCATACCCTTTGTCGGTCGACGTTAAGACCAAAATGGGAAGCGCCGCTTCGAGTGACTCCGATTCGTCCTCCGTCGTTGATTGTCAGCCGAAGAAAGCCATTAATCTCGATCTTAACCTGGCTCCTCCATCGGAAGATTGA	651	0.5806	MTVKEKLGIKHTKPNIAKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAARQFRGQKAKTNFPLPNESGLNGNKQSPSETSTVESSSSRGAPEREITRRCDVGVVVDRFPFLPIQPHHMAFGCGGGGGVAGFAPAVRPVFFFEQAAGGRAEFVAQPYPLSVDVKTKMGSAASSDSDSSSVVDCQPKKAINLDLNLAPPSED	216

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco08g0758	216	FunFam	Ethylene-responsive transcription factor 2	20	79	-	-
	Acco08g0758	216	SUPERFAMILY	DNA-binding domain	21	79	IPR016177	GO:0003677
	Acco08g0758	216	ProSiteProfiles	AP2/ERF domain profile.	21	78	IPR001471	GO:0003700\|GO:0006355
	Acco08g0758	216	CDD	AP2	21	78	IPR001471	GO:0003700\|GO:0006355
	Acco08g0758	216	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	17	197	-	-
	Acco08g0758	216	Pfam	AP2 domain	21	70	IPR001471	GO:0003700\|GO:0006355
	Acco08g0758	216	MobiDBLite	consensus disorder prediction	74	105	-	-
	Acco08g0758	216	Gene3D	AP2/ERF domain	20	79	IPR036955	GO:0003700\|GO:0006355
	Acco08g0758	216	PRINTS	Ethylene responsive element binding protein signature	44	60	IPR001471	GO:0003700\|GO:0006355
	Acco08g0758	216	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Acco08g0758	216	SMART	rav1_2	21	84	IPR001471	GO:0003700\|GO:0006355
	Acco08g0758	216	MobiDBLite	consensus disorder prediction	71	109	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco08g0758	Acco-ChrAcco08	6731615	6732265	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco08g0758	8	216	AP2-EREBP Transcription Factor Family	AT5G44210	47.465	7.07e-49	157

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco08g0758		AP2	9.2e-15	CL0081