Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0755 ATGAGCATTTCTGAATGCACAGAGTATCAGTTCTTTGATGAAACCCACCACCTTCTCTTCCCAAACAAATCAATCATCATAGACATTGACAAGTACATGCCACCCAGGAAACTCCTCACTCGCCTTGGCACCGCCAAAACCACTCTCCACGACGTTGCCGCCGATATGTTCACGGACTTGCCGCAGTTTTCCTCTTCCAACGAGACCCTTCTCCGGAAATTCCTTCCCCACAACAACCTCGAATCCTCCGACGACGATGATTCTGACCCGTACTCCTCGGAACACTTCCGAATGTATGAGTTCAAGGTTCGCCGGTGCAATCGGAGCCGGAGCCATGACTGGACTGACTGTCCCTTCGCTCATCCTGGTGAAAAGGCTCGCCGGCGCGATCCCAGGAAGTATCATTATTCCAGCAACATCTGCCCCGAGTACCGCCGCAGCGGCGAATGCAAACGCGGCGATAGTTGTGAGTTTGCACACGGGGTGTTTGAATGTTGGCTTCACCCCGCGAGGTACAAAACAGAGGCTTGTAAGGATGGTAAGAATTGTAAGCGAAAGGTATGTTTCTTCGCTCACACACCTCGCCAACTGAGAATTTTGCCGTCGAATAATTGCTCTTCTGCTTCACATGATCAAATCTCAGACAATAATAAGAACAAATTCTTAAAATCCTCACTGGGATCAAATAATTGCTGTATGTTTTGTCACCGATCTCCTAAGGCTAATAATTCTTCTCCGACTTCCACCCTCTTCGGGATGTCCCATTTTTCACCACCATTGTCACCGTCGTCCCCTCTTTCGCCGATCAAAACAGGACACACTGCAAATGGTTTATCTCCAATTTCTCGGTATAATGATAGAATTAAGGGATCTGAGGTTTATAATAATCAGGGGATGATAATGAGCTACAGGGATGCTCTCACTGAGTTGATGAACTCCTTGGAGGTTCTGAATTTCAATGAAGCTTCGTCTTCTTCACCTGAAATAATCTCTGCAACTACCACTAATAATCAGTCTGCAAATCTGCACTGGCTTGACGTTTCAACAGCTCTATCTGCTTCAAGGAAAATCTCATCAACTGGAAAATTTTTGAACGAAAGCAGAATGGTTGGTGATGATAATAATAACGGGTCTTCATCATCTGCAACTGATCCAGATCTGGGTTGGGTCAATGATCTGCTGATATAG 1188 0.4613 MSISECTEYQFFDETHHLLFPNKSIIIDIDKYMPPRKLLTRLGTAKTTLHDVAADMFTDLPQFSSSNETLLRKFLPHNNLESSDDDDSDPYSSEHFRMYEFKVRRCNRSRSHDWTDCPFAHPGEKARRRDPRKYHYSSNICPEYRRSGECKRGDSCEFAHGVFECWLHPARYKTEACKDGKNCKRKVCFFAHTPRQLRILPSNNCSSASHDQISDNNKNKFLKSSLGSNNCCMFCHRSPKANNSSPTSTLFGMSHFSPPLSPSSPLSPIKTGHTANGLSPISRYNDRIKGSEVYNNQGMIMSYRDALTELMNSLEVLNFNEASSSSPEIISATTTNNQSANLHWLDVSTALSASRKISSTGKFLNESRMVGDDNNNGSSSSATDPDLGWVNDLLI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0755 395 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Acco08g0755 395 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Acco08g0755 395 SUPERFAMILY CCCH zinc finger 134 165 IPR036855 GO:0046872
Acco08g0755 395 Gene3D - 136 200 - -
Acco08g0755 395 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Acco08g0755 395 PANTHER UNKEMPT FAMILY MEMBER 54 394 IPR045234 -
Acco08g0755 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0755 Acco-ChrAcco08 6697215 6698402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0755 85 200 C2H2 Transcription Factor Family AT5G12850 62.931 8.77e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco08g0755 zf-CCCH 3.7e-09 CL0537