Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0752 ATGCCTGCGCAGAAGCGGTCTTTGCCGGAGTCTACGGACGACGGAGAGGTCTCAGAACTTAACAACCACCGCCACGCGAAGCAATCTCATCGGGACCGAGAGCTACAAGGCGAAGAAAAGAGGGCAGAGGAAGATGAGCAAGGGGAGCTTGTTGAAGGGGAAGAAGAAGAAGGACAACAGAACGAGCAAGAGCAGGATAAGGAGGAGAAAGCAGAGGATTCTGAGGAAAGCCCATCTTCTGAACCCGAAGAGAAACCTGAATTTGTGTTTGTTGAACTTCTGGAAATACGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATCAAGAAAACACGGACTGTCATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGACAAGTCAATGAGATTAGGGAATAATGAATGCCCTGCTTGTCGCACACATTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCTTTAATTGCTGCTCTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTGGTTCAACGGCAATCTGAAGCACTGGTTAAGAGGCGTAATAAGGATACACCACCTGGTGCATTTGTCCCAAGGTCACAGCGCAATCATAGGAATGTTCACACTAGGAGACAGAACCATGGAATTGATCAAGGATCAGAAGATAACGAAGAGGAAAATGAAAATAACGGAGAAAAAGACTCATCCTCCGCAGATGAGCGGAGTGCAGAACCAAAGAAAAAGCGAAAGAGAGGGATAAGAGTTCGTCCCTCCCAGCCTTCCTCATCAATGGCAAGTGCTGATGGTGGATTTATAGAAAGTGATGTCGATATCTTGAGAGAAAATCGAGGAATTTCTTCAAGGCATCTGTCAAAACCTCAGAAGCTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACACTCGACATGGCAGTAGCAGTGGTAGCTCTAGCAAGAGTTCCCGTGTTAGTCGTGTGTCTAAGTTTGTTGATTATTTAAAAGGCTTAGAAGAAAACACAGATGAGTATGATATCCATCTTATGCTTGTTTCTTTGGACAAAGGAAGCATCCCAAGTTTGCAGCAGCCACACCTTTGCTGTCGGCCAACTTTGTCCGTCAAGCACCTTTGTGAATATATTGCTCGTCAGAACGTGTTGGCAGCTGAAGAAGTTGAGATATTGGCGGTTAAAGGATGCTGCAGCATTATCTGTGAGAAGTCAGTTGATGAGACTTCAACCTTGCTGAATGACGAACTTACTACACTGATTGTAGATCCCTGCAAAGATGAACTGGAAACTTTGCAAGTACATGAAACCTTGTCAGGGCTCAAATCCAAATGCATATCTAAAATGGAGCACCTGATTCTGGCATTTAGGAGGAAGGAGAAAGTAGTGTGA 1458 0.4458 MPAQKRSLPESTDDGEVSELNNHRHAKQSHRDRELQGEEKRAEEDEQGELVEGEEEEGQQNEQEQDKEEKAEDSEESPSSEPEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRNKDTPPGAFVPRSQRNHRNVHTRRQNHGIDQGSEDNEEENENNGEKDSSSADERSAEPKKKRKRGIRVRPSQPSSSMASADGGFIESDVDILRENRGISSRHLSKPQKLTWGRGGFRSHTRHGSSSGSSSKSSRVSRVSKFVDYLKGLEENTDEYDIHLMLVSLDKGSIPSLQQPHLCCRPTLSVKHLCEYIARQNVLAAEEVEILAVKGCCSIICEKSVDETSTLLNDELTTLIVDPCKDELETLQVHETLSGLKSKCISKMEHLILAFRRKEKVV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0752 485 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Acco08g0752 485 MobiDBLite consensus disorder prediction 305 340 - -
Acco08g0752 485 Coils Coil 168 199 - -
Acco08g0752 485 MobiDBLite consensus disorder prediction 1 86 - -
Acco08g0752 485 MobiDBLite consensus disorder prediction 48 80 - -
Acco08g0752 485 MobiDBLite consensus disorder prediction 9 47 - -
Acco08g0752 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 171 IPR013083 -
Acco08g0752 485 SUPERFAMILY RING/U-box 89 156 - -
Acco08g0752 485 ProSiteProfiles Zinc finger RING-type profile. 102 142 IPR001841 -
Acco08g0752 485 SMART ring_2 102 141 IPR001841 -
Acco08g0752 485 Pfam Zinc finger, C3HC4 type (RING finger) 101 141 - -
Acco08g0752 485 MobiDBLite consensus disorder prediction 200 290 - -
Acco08g0752 485 CDD RING-HC_RING1-like 99 164 - -
Acco08g0752 485 MobiDBLite consensus disorder prediction 251 267 - -
Acco08g0752 485 PANTHER OS11G0578200 PROTEIN 1 483 IPR044592 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0752 Acco-ChrAcco08 6661125 6668049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0752 95 165 C3H Transcription Factor Family AT3G23060 35.135 4.21e-07 50.4