Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0718 ATGAACCGTCGCTTATTCCTTCCACAAAACTCCTTCCAAATCCATCTACTTGAATATCCGAAAGATCACATTGTAAACCCGAAAATGGCTGCGTTAGACCAGTATTTTGATGAGCCCGTGTCCCAAACTGACTCCTATGGTGAAGAAAACTCATATTCTGATAGAACTGATTCTAATGGATTTGACTGCAATATCTGCTTGGACTGTGTGCAAGAGCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATTTACACAACCTTTCCAGCGAAGAATACAGCGAACAGCGGAGTCCACAGTGTCCGGTATGCAAAACTGAAGTTTCCCTATCCTCGCTCGTTCCACTCTACGGTCGAGGCCAAACCACAAAACCTTCTTCCAAAGGCAAGTCCCAGCATATGGGGAATATGATCCCACAAAGACCACATGGACCTTTGTCATCGGTTTATCGTGGAAGACCATTTAATAGTGCTACTACTAGTGCAGTTCCACAACCCTCTTCCCAATTTTATAATAGTCACTATCCTTATCATCATCATTCTCAACAGTTCAACTCAATCCCAAGCAGCTCGAACTCTGGAATGCTAGGCATGGATGGTGCACTGAGGAACGCATTCGACTCAAGAATTGGCGTGTTTGGTGAGATGGTATACGCAAGAGTGTTTGGGAACCAAGTGGCAAACGTATACGCGTACCCAGATACGTATAATCTAGCTCGGAACAGTAATCCAAGGATCAGAAGGCACTTGCGGCAAACTGATAAGCAAATGAATAGAATCTGCTTTTTCCTGCTTTGTTCTATAATTTTCTGTCTTCTCTTATTCTGA 852 0.4401 MNRRLFLPQNSFQIHLLEYPKDHIVNPKMAALDQYFDEPVSQTDSYGEENSYSDRTDSNGFDCNICLDCVQEPVVTLCGHLYCWPCIYKWLHLHNLSSEEYSEQRSPQCPVCKTEVSLSSLVPLYGRGQTTKPSSKGKSQHMGNMIPQRPHGPLSSVYRGRPFNSATTSAVPQPSSQFYNSHYPYHHHSQQFNSIPSSSNSGMLGMDGALRNAFDSRIGVFGEMVYARVFGNQVANVYAYPDTYNLARNSNPRIRRHLRQTDKQMNRICFFLLCSIIFCLLLF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0718 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 148 IPR013083 -
Acco08g0718 283 Pfam Zinc finger, C3HC4 type (RING finger) 63 95 - -
Acco08g0718 283 ProSitePatterns Zinc finger RING-type signature. 78 87 IPR017907 -
Acco08g0718 283 SMART ring_2 63 112 IPR001841 -
Acco08g0718 283 CDD RING-HC_AtRMA-like 61 113 - -
Acco08g0718 283 MobiDBLite consensus disorder prediction 127 151 - -
Acco08g0718 283 ProSiteProfiles Zinc finger RING-type profile. 63 113 IPR001841 -
Acco08g0718 283 SUPERFAMILY RING/U-box 52 118 - -
Acco08g0718 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 49 281 IPR045103 GO:0005783|GO:0006511|GO:0061630
Acco08g0718 283 MobiDBLite consensus disorder prediction 127 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0718 Acco-ChrAcco08 6335931 6340482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0718 56 283 C3H Transcription Factor Family AT4G28270 37.768 6.07e-42 141