Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0709 ATGCAGCGCCCCCGTAGCTCCGACGTGATTTTCATCTCATTGTTGATTCATGTCCTGCTGGTAAACGCGCAGGGGCAGCTTCAGCACCGGGTTTTAGACCCGCATTGGTACCCCGGCACCGCCACCTGGTACGGCAACCCCGAAGGAGACGGAAGCAACGGTGGAGCATGTGGATACGGGTCGTTGGTGGACGTGAGGCCGATGAAGGCGAGAGTTGGAGCGGTGGGTCCGGTACTGTTTATGAACGGAGAGGGGTGTGGAGCCTGCTACAAGGTGAAATGCTTGGACAGGAGTATATGCTCGAAGCGAGCTGTGACGGTGATAATCACCGACGAATGTCCAGGCTGCCCCTCCGACCGGACCCACTTTGACCTCAGTGGCGCTGCATTTGGCCGCATGGCTCTTGCCGGCGAGAACCCTCTCCTCAGAAACCGTGGTCAAATCCCAGTCGTTTACCGAAGGACACCATGTAAATATCCAGGTAGAAACATTGCCTTCCATGTTAATGAAGGATCCACACCTTTCTGGCTATCGCTCATGGTAGAGTTTGAGGATGGAGACGGAGACATTGGCTCTATGCATATTCAAGAAGCAGGGTCAAGCGAGTGGCTTCAGATGAATCATCTGTGGGGTGCAAATTGGAACATTATTGGAGGGCCAATGAAGGGACCCTTCTCTGTGAAATTAAGCACATCAACTGGGAAAACACTTTCTGCAAGAGATGTTATCCCTACAAACTGGACTCCAAGAGCCACTTACACTTCTCGTCTCAACTTCTTCCACAATTAG 789 0.526 MQRPRSSDVIFISLLIHVLLVNAQGQLQHRVLDPHWYPGTATWYGNPEGDGSNGGACGYGSLVDVRPMKARVGAVGPVLFMNGEGCGACYKVKCLDRSICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMALAGENPLLRNRGQIPVVYRRTPCKYPGRNIAFHVNEGSTPFWLSLMVEFEDGDGDIGSMHIQEAGSSEWLQMNHLWGANWNIIGGPMKGPFSVKLSTSTGKTLSARDVIPTNWTPRATYTSRLNFFHN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0709 262 FunFam Expansin B3 22 158 - -
Acco08g0709 262 FunFam Beta-expansin 3 159 260 - -
Acco08g0709 262 SUPERFAMILY PHL pollen allergen 162 255 IPR036749 -
Acco08g0709 262 Gene3D - 22 157 IPR036908 -
Acco08g0709 262 CDD DPBB_EXPB_N 36 157 - -
Acco08g0709 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Acco08g0709 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Acco08g0709 262 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Acco08g0709 262 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Acco08g0709 262 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Acco08g0709 262 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Acco08g0709 262 Gene3D - 158 256 IPR036749 -
Acco08g0709 262 Pfam Lytic transglycolase 77 152 IPR009009 -
Acco08g0709 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Acco08g0709 262 SUPERFAMILY Barwin-like endoglucanases 31 161 IPR036908 -
Acco08g0709 262 Pfam Expansin C-terminal domain 164 244 IPR007117 -
Acco08g0709 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 162 IPR007112 -
Acco08g0709 262 PRINTS Major pollen allergen Lol pI signature 134 149 IPR005795 GO:0005576|GO:0019953
Acco08g0709 262 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Acco08g0709 262 PRINTS Major pollen allergen Lol pI signature 182 197 IPR005795 GO:0005576|GO:0019953
Acco08g0709 262 PRINTS Major pollen allergen Lol pI signature 112 127 IPR005795 GO:0005576|GO:0019953
Acco08g0709 262 PRINTS Major pollen allergen Lol pI signature 231 248 IPR005795 GO:0005576|GO:0019953
Acco08g0709 262 SMART dpbb_1 72 152 IPR007112 -
Acco08g0709 262 PANTHER EXPANSIN-B3 16 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0709 Acco-ChrAcco08 6307669 6310151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0709 9 197 Expansin Gene Family AT4G28250 67.188 7.92e-93 271