Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0629 ATGATGAGAGGCCCTTACTATGACAGAAATGGAATAAAGAGAGGTGCTTGGAGCAAGGAAGAAGATGAAAGGTTAAGAGCATATGTTGAGAGATACGGACACAGTAATTGGCGTCAACTTCCCAAAAATGCAGGTTTATCAAGGTGGTCTTTGATTGCGGAAAGATTACCAGGGAGAAGTGACAACGAGATTAAGAACCATTGGCATAGCCACCTAAAGAAGCACTTGGAGCGCAATCACGGGGGAAAATCTGAGTTCAAAATGAAACGTAGTGGTGCTTGCAAAGGAGAAACTACAAAGTATTTCGAACCTGATGAAAACACTTTGCTCGGTTTTGATTCTGCTTCCTCCAGCAATATCTCAGAAAGCTCACCACCTAGGTACTGTTCATTATCAACCTTTGCCTTCCGAGAAGAAATATATGAAGATTTCGGAGATTTTTGGACGCAACCATTTGTCCCAGAGAACACGTATAAGCAGGACTATGACTATTATAGTATGAACTATGCAGCGGATGGAGCTGACGTGGACGAGTATTCCTCGTACCTCTTGGATAATGCTGAGTTCTTGTGCCAAGTCATGCAAGAATTTCCGAAAAATCCTACAAAGCATATATTAGATTTAGAGTCTATATGCCAGTTTCTAGGTTTGAGATGCTTGCTTCGTTCGAAGTTGGAGGAGAAATATGTGGAGGGCAATTTGGTTCTCCCAGGTCATCAGGCCTGGCATCCTCAATACTGGTTTCTGGTGATGATGAGAAGCCCCTACTATGACAAAAATGGATTAAAGAGGGGTGCGTGGAGTAAGGAGGAGGATGAAATGTTAAGAGCATATGTTGAGAGACACAGCCACAGTAATTGGCGTCGACTTCCCAAACACGCAGAAATACAAGTTGGGATGGATCTTGATGGAGTTTCAGCTGCAATAACGTACAGATGGTCTTCAATCGCGGAAAGATTGCCAGGGAGAAGTGACAACGAAATTAAGAACCATTGGCATAGCCACCTAAAGAAGCTCTTGGAGCGCAACCATGCGGAAAAATGTGAGTTGAAAACGAAGGCTAGCGATAATTGTGTAGGAGAAGCAACAAAGTATTTGGAACCTGAAAACACTCTGCTTGGTTTTGCTGCTGCTTCCTCCAATGATATTATCTCATCAGAAAATTCACCACACATCTACAATTCATCTTCAAACTTTTCCTTCAGAGGAGAAGGTGTTGCTAATGCCACTGCATTTGAAATATTTGAAGAATTCAGCGATTTTTGGACCCAACCATTTCTCCCAGAAAATATATATGACCAAAATAACTATAATAGTCTGAACTATGGAGCAAATGAAGCAGACGTGGATGAATATTCCTCATACGTCTCCGATAACGCTGACTTTTTGTGCCACGTGATGCAAGAATTCCCAGAAGATCCTAAAATGGATATATAA 1437 0.4182 MMRGPYYDRNGIKRGAWSKEEDERLRAYVERYGHSNWRQLPKNAGLSRWSLIAERLPGRSDNEIKNHWHSHLKKHLERNHGGKSEFKMKRSGACKGETTKYFEPDENTLLGFDSASSSNISESSPPRYCSLSTFAFREEIYEDFGDFWTQPFVPENTYKQDYDYYSMNYAADGADVDEYSSYLLDNAEFLCQVMQEFPKNPTKHILDLESICQFLGLRCLLRSKLEEKYVEGNLVLPGHQAWHPQYWFLVMMRSPYYDKNGLKRGAWSKEEDEMLRAYVERHSHSNWRRLPKHAEIQVGMDLDGVSAAITYRWSSIAERLPGRSDNEIKNHWHSHLKKLLERNHAEKCELKTKASDNCVGEATKYLEPENTLLGFAAASSNDIISSENSPHIYNSSSNFSFRGEGVANATAFEIFEEFSDFWTQPFLPENIYDQNNYNSLNYGANEADVDEYSSYVSDNADFLCHVMQEFPEDPKMDI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0629 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 340 IPR017930 -
Acco08g0629 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 76 IPR017930 -
Acco08g0629 478 CDD SANT 266 336 IPR001005 -
Acco08g0629 478 ProSiteProfiles Myb-like domain profile. 259 336 IPR001005 -
Acco08g0629 478 CDD SANT 16 72 IPR001005 -
Acco08g0629 478 Gene3D - 302 357 - -
Acco08g0629 478 SMART sant 263 338 IPR001005 -
Acco08g0629 478 SMART sant 13 74 IPR001005 -
Acco08g0629 478 SUPERFAMILY Homeodomain-like 264 337 IPR009057 -
Acco08g0629 478 Gene3D - 257 301 - -
Acco08g0629 478 ProSiteProfiles Myb-like domain profile. 9 72 IPR001005 -
Acco08g0629 478 Pfam Myb-like DNA-binding domain 312 336 IPR001005 -
Acco08g0629 478 Pfam Myb-like DNA-binding domain 14 72 IPR001005 -
Acco08g0629 478 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 311 402 - -
Acco08g0629 478 Gene3D - 12 78 - -
Acco08g0629 478 SUPERFAMILY Homeodomain-like 5 80 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0629 Acco-ChrAcco08 5531365 5538977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0629 1 85 MYB Transcription Factor Family AT2G31180 40.157 9.42e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco08g0629 Myb_DNA-binding 2.6e-14 CL0123