Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0622 ATGAGGAACCCTCGCACTGACACAAATGGATTGAAGAAAGGCACATGGACACCAGAAGAAGACCACAAGCTCATTGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAGGTTTGCAGGTCTGGCAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGCTCAATTACCTGAGGCCCGACATTAAAAGAGGCAACTTCACTAAGGAAGAAGATGAACTTATCATCAAACTCCACCGCCAGCTTGGTAACAGATGGTCTGCCATAGCAGCCAAGTTACCGGGAAGAACAGATAATGATTTAAAGAACCACTGGCACTCCAACCTCAAAAACAGGAACGAAATTCAACCTCAAAACAACTCAGTCACAGATGACAATGATGGAATTGTCGTCAAGGAAGGCAGGCAATATCATTCTCAAGGTATCACTACTGACTCTGCAACTTCCAACGACCATGGGAAATCGGGGTCTGAGTCATCAAGCTCGCCGAGTGAATCCTCGGACATAACGACTTCCTTGGAGAGTAACCAGGATTCGGTCAGAGATCATGAGTTCTCTTTTCTAGATGCGTATAATAATGATCAGCCAATGAGTGGAAATTTCTGGACGGATCCATGTGTAGTTGATTCTGATGACCTTCACTTCTACCTTAATACTGAATTAACGCCGATCGAGAATGAAGCTCAAGTCTTTGCTCCTTTCTACAATATGACGCAGCTTTGGACTCACAATTTCTACGACCAATATTGTGGTCTCTTCTACGATAATTCTAATCATTAG 786 0.4478 MRNPRTDTNGLKKGTWTPEEDHKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWLNYLRPDIKRGNFTKEEDELIIKLHRQLGNRWSAIAAKLPGRTDNDLKNHWHSNLKNRNEIQPQNNSVTDDNDGIVVKEGRQYHSQGITTDSATSNDHGKSGSESSSSPSESSDITTSLESNQDSVRDHEFSFLDAYNNDQPMSGNFWTDPCVVDSDDLHFYLNTELTPIENEAQVFAPFYNMTQLWTHNFYDQYCGLFYDNSNH 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0622 261 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Acco08g0622 261 MobiDBLite consensus disorder prediction 142 178 - -
Acco08g0622 261 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Acco08g0622 261 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Acco08g0622 261 CDD SANT 68 111 IPR001005 -
Acco08g0622 261 SMART sant 12 62 IPR001005 -
Acco08g0622 261 SMART sant 65 113 IPR001005 -
Acco08g0622 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Acco08g0622 261 CDD SANT 15 60 IPR001005 -
Acco08g0622 261 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Acco08g0622 261 FunFam MYB-related transcription factor 12 65 - -
Acco08g0622 261 Gene3D - 5 65 - -
Acco08g0622 261 Gene3D - 68 129 - -
Acco08g0622 261 MobiDBLite consensus disorder prediction 142 180 - -
Acco08g0622 261 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Acco08g0622 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Acco08g0622 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0622 Acco-ChrAcco08 5405050 5406218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0622 2 211 MYB Transcription Factor Family AT2G31180 47.619 1.69e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco08g0622 Myb_DNA-binding 4.8e-13 CL0123