Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0558 ATGTCTACGGTGAGGTTACTGTTCGTCCTGCTTTTATGCCTGTGGATTTCCACAGAAGTGGCGGCTAGAACCGGAAATACCATTACAAACAAGACTAATGTTCCTACGAGGCCAAGCGTTGTGAGAGTCGGAGTACTGTTTACTCTCAATTCCTACATTGGAAGATCAGCAAAACCTGCAATTTTTGCTGCCCTCGATGATGTTAATAATGATACAACCATTCTTCCAGGCATTAAAATGGAAGTTATTTTAGTTGATACAAATTGCAGCGGGTTTATCGGCACACTGGAAGCTATGCAGTTCATGGAGAATGAAGTGGTTGCTGCTATTGGTCCACAATCATCTGGAATAGCTCATGTCATATCTCATGTTGTTAATGAACTCCACGTGCCTCTTCTGTCATTTGGGGCTACAGACCCTACTCTCTCTTCTCTACAGTACACATATTTCGTCCGCACGACCCACAGTGACTATTTTATGATGAATGCAGTTGCAAACATGATTGACTACTTTGGTTGGAAGGAGGTGATTGCCATCTATGTGGATGATGATAATGGTAGAGGTGGGATTGCAGCTCTAGATGATGCACTTGCAAAGAAGCGTGCCAAGATCTCTTATAAGGCTGCCTTAGCCGTTGGAGCCTCTGCAAGCGATATCAGTATATTGTTAAATGCGGTAAACCTAATGGAATCGCGGGTCTATGTTCTCCATGTTAACCCTGATACTGGTTTGTCCATTTTTTCTCTTGCAAAGAAACTTGGTATGATGGGCAACGGTTATGTTTGGATTGCTACAGATTGGCTTCCTTCGGTTCTAGATGCAATAGAACCAGTTGATCCTGACACAATGAATCTCTTACAAGGGGTTATTGCCTTACGCCGTCATACTCCTGACACTGATCTCAAGAAGAGGTTTATCTCTAGGCTGAAAAACAGTAAAAACAAGGAGACTATAGGGCTTAATTCCTTTGCATTATATGCATATGATTCAATTTGGTTAGCAGCACGTGCTCTTGATGCTTTTCTTAATGAAGGCGGGACTATATCTTTTGGTAGTGACCCTAAATTGCATGACACAAATGGAAGCGCATTGAATTTTACATCACTTCGTTCTTTTGAAAGTGGGCCACAGTTTCTCAAGAAAGTCCTGGCAATGAACTTCACTGGTGTGAGTGGTCAAATTCAGTTTGATGGGGACAAGAATTTCATCCATCCAGCTTATGATATTCTAAACATTGTTGGAACTAGTCGTAGAATTGGTTATTGGACTAATTACTCTGGCCTGTCAATCATAGCGCCTGAAATTTTATATACAAAACCACCCAACATTTCATCTAGCAATCAACATCTTTCTAGTGTAATATGGCCAGGAGACACTATAACAATACCCCGAGGATGGGTGTTTCCCAACAATGGAAAGCCACTGCGAATAGCAGTACCAAATGGAGTAAGCTATCTGGAGTTTGTTTCCAAAAGCAAGGACCCCCCAGGAGTAAAAGGTTATTGCATTGACGTCTTTGAAGCAGCCATAAACTTGCTACCATATCCCCTCCCACGACACTATATATTATATGGAGATGGTCATACAAATCCCAACTACGATGAAATCATAGATGAAGTTGCACGTGGGAATTTTGATGCAGTTGTTGGAGATGTAACAATTATCAAAAGCAGGATAAAGGTTGTGGATTTTACTCAACCTTACATGGAATCAGGGTTAGTTGTAGTTGTTCCAATTAAGGAGGTAAAGTCAAGCCCTTGGGCATTTCTCAAGCCGTTCACTTTGCAAATGTGGTGTGTTACTAGTGCCTTCTTTCTCTTAGTAGGAGCTGTGATATGGATTCTTGAGCACCGGCTTAATCATGAGTTTCGTGGTTCTAAAAGGAAACAACTTATGACCATGTTTTGGTTTAGCTTCTCAACAATGTTTTTCTCACATAGAGAAAATACTGTTAGTTTTTGTGGTGAGAGTGAGATTGATGGCATAAGTCATGGTCAAGGTTTAAATTTGATGGTTTAA 2019 0.4101 MSTVRLLFVLLLCLWISTEVAARTGNTITNKTNVPTRPSVVRVGVLFTLNSYIGRSAKPAIFAALDDVNNDTTILPGIKMEVILVDTNCSGFIGTLEAMQFMENEVVAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLSSLQYTYFVRTTHSDYFMMNAVANMIDYFGWKEVIAIYVDDDNGRGGIAALDDALAKKRAKISYKAALAVGASASDISILLNAVNLMESRVYVLHVNPDTGLSIFSLAKKLGMMGNGYVWIATDWLPSVLDAIEPVDPDTMNLLQGVIALRRHTPDTDLKKRFISRLKNSKNKETIGLNSFALYAYDSIWLAARALDAFLNEGGTISFGSDPKLHDTNGSALNFTSLRSFESGPQFLKKVLAMNFTGVSGQIQFDGDKNFIHPAYDILNIVGTSRRIGYWTNYSGLSIIAPEILYTKPPNISSSNQHLSSVIWPGDTITIPRGWVFPNNGKPLRIAVPNGVSYLEFVSKSKDPPGVKGYCIDVFEAAINLLPYPLPRHYILYGDGHTNPNYDEIIDEVARGNFDAVVGDVTIIKSRIKVVDFTQPYMESGLVVVVPIKEVKSSPWAFLKPFTLQMWCVTSAFFLLVGAVIWILEHRLNHEFRGSKRKQLMTMFWFSFSTMFFSHRENTVSFCGESEIDGISHGQGLNLMV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0558 672 FunFam Glutamate receptor 156 322 - -
Acco08g0558 672 FunFam Glutamate receptor 470 586 - -
Acco08g0558 672 Pfam Receptor family ligand binding region 58 414 IPR001828 -
Acco08g0558 672 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 54 70 - -
Acco08g0558 672 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 327 339 - -
Acco08g0558 672 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 114 142 - -
Acco08g0558 672 CDD PBP1_GABAb_receptor_plant 42 429 IPR044440 -
Acco08g0558 672 Pfam Bacterial extracellular solute-binding proteins, family 3 532 580 IPR001638 -
Acco08g0558 672 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 641 IPR015683 -
Acco08g0558 672 Gene3D - 156 428 - -
Acco08g0558 672 SMART GluR_14 476 672 IPR001320 GO:0015276|GO:0016020
Acco08g0558 672 Pfam Ligand-gated ion channel 595 654 IPR001320 GO:0015276|GO:0016020
Acco08g0558 672 Gene3D - 60 404 - -
Acco08g0558 672 SUPERFAMILY Periplasmic binding protein-like II 451 600 - -
Acco08g0558 672 SUPERFAMILY Periplasmic binding protein-like I 37 431 IPR028082 -
Acco08g0558 672 Gene3D - 587 655 - -
Acco08g0558 672 Gene3D - 470 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0558 Acco-ChrAcco08 4491430 4497000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0558 37 656 Ion Channels AT1G05200 63.768 0.0 872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3577 01 52292257 52295849 Acco08g0558 08 4491430 4497000 CCT
Acco08g0558 08 4491430 4497000 Acco01g3580 01 52302576 52306963 CCT
Acco08g0558 08 4491430 4497000 Acco08g0558 08 4491430 4497000 ECH