Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0542 ATGGAGTTACGTTCTCGTAAGCGACTTCCTACCCCTGATACTGATGTAACAAGAAATGAACAACTGCCCATTGATGCCTCTGGAGAAGCTAAAACTGCTGGTGATTGTGGCAATAATGCAAATGAAGTTTCTTCTGGTTCACATTCCGGTTTTGGAGATGAAGAAGCTTCGAGCTTCTCTCTTGACTTGAATGAAGAATCTACTTCAAGCTTTTGTACTGCTGATGGGGTAGACGACAACTCTGATTCATCCAGTAGCCAGAATAGTCGGCGTATAAAGAAAAGAGGAAAGAAAAGAAAAAAAACCAGCTCAAGAAATGGAGAATCCAGTCAGATCGTGGGATTGCTGGAGCATGGAGACATTGATGACTCCGCAATTGCCCAGGTTTTGGTTAGCCTGAGCAAGAAGAAGAAAACAAAAAGAGCAAGAAAGGATCCAAAGCCAGTGTTGTTGTGGAAGGTGTGGGAAGAGCAGAATGAGAGATGGATCGATGAGAATTTATCGAAAGATATTGACATGGATCATCAGAATGAGCTAATGATTGAAACTGCAGAGGCTTCATCTGACCTTACCATGCCGTTACTAAGATACCAAAAGGAATGGCTAGCTTGGGCTTTGAAACAGGAGAATTCTGAAATTAGGGGGGGCATTCTTGCAGACGAGATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAACGTGAAACCCAGAAAATGGTTTGTAAACCAGATGAAACATCCTCTTTGCCAGGTTCATCTTCAACCTTGCCTGGGGTCAAAGGAACACTTGTTATTTGTCCTTTGGTCGCTGTTACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTAAAAGGAAGCACCAAGGTGCTAGTTTATCATGGGGCCAAGAGAGGGAAGTATAGTGAAGAGTTCTCAAATTACGATTTTGTAATAACTACATACTCTACTGTGGAATCTGAGTATAGGAAATATATGATGCCCCCTAAGGAGAAGTGCCCGCATTGTGGCAAATCTTTCAGCCACTCAAGGTTACCGATTCACCAGAAATATTATTGTGGGCCTAACTCTGAGAGAACAGAAAAACAATCGAAGCAGTTCAAGAAAAAGAAGAGAAAACTTAATATAAAGAAGATAGTTCAGATGAAAATGGGACCATCAGATACCAAACTCGAGGGGAAGTCTCTTTTACATGTTGTAAAGTGGCAGCGGATCATTTTGGATGAGGCACACTATATAAAAGCTAGACAATGTAACACTGCAAAAGCAATTCATGCTCTAGAGTCTTCCTATAGATGGGCGTTAAGTGGAACTCCCCTTCAGAATCGTGTAGGAGAGCTGTATTCTCTGATACGTTTCTTGCAAATAGTTCCTTTTTCCCATTACTTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGTTCTAAGGAATGTTCAAACTGCCAGCACAGTTCTGTCAGACACTTCTGTTGGTGGAATAAATATATAGCCACGCCAATTCAAGGATATGGAAACAGTGATCCTGGAAGGAGAGCGATGATATTGCTTAAACACAAGGTTTTAAAAAATGTAATATTAAGGCGCACTAAATTAGGCCGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATACAATGAGAGTCAGGCACAGTTTAATACATATGCGGAATCAAATACTGTGACGAATAACTACGCTCATATATTTGACCTCCTGACTAGACTTAGACAGGCTGTTGATCATCCATACCTTGTTGTATATTCTCAAGCTGCGTCATTAAAAGCTGGGGTTGAGGTTTGCAATGACAATGTTGAACAAGTATGTGGGCTTTGTCATGACCCAGTTGATGATCCTGTGGTTACCTCGTGTGAACATGTCTTTTGTAAGGCATGCTTGATAGACTTCTCTTCTTCCTTGGGGCGAGTGTCATGCCCTTCATGCCCTAAATTGCTTACTGTTGATCTAAGCTCAAATAAGGATGTTGGGGATCAGACTACAAAAACAACAATAAAGGGTTTCAGATCCTCAAGCATTTTAAATAGAATTCGGCTTGAAAACTTTCAAACAAGTACCAAAATAGAGGCTTTGAGAGAAGAAATTCGATTCATGGTAGAAAGGGATGGCTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACTTCATTCTTGGATCTCATACACTACTCCCTGCTCAAGTCTGGTGTGTCTTGTGCTCAATTGAATGGAAGCATGTCATTAGCTGCTCGGGATGCAGCCATTAAGAGATTTACTGATGACCCAGAATGCAAAATCTTTCTCATGAGCTTGAAAGCTGGTGGTGTTGCCCTCAATTTGACCGTAGCATCACATGTTTTTATTATGGACCCTTGGTGGAACCCTGCCGTGGAGCGTCAGGCTCAAGATAGAATTCACCGAATAGGGCAATATAAACCGATCAGAATTATCAGGATTGTGATCGAGAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAGCTAATATTTGAAGGGACTGTAGGGGGCTCTTCCGAAGCTCTGGGCAAACTCACAGAGGAAGACATGAGATTTCTGTTTGCCTGA 2652 0.417 MELRSRKRLPTPDTDVTRNEQLPIDASGEAKTAGDCGNNANEVSSGSHSGFGDEEASSFSLDLNEESTSSFCTADGVDDNSDSSSSQNSRRIKKRGKKRKKTSSRNGESSQIVGLLEHGDIDDSAIAQVLVSLSKKKKTKRARKDPKPVLLWKVWEEQNERWIDENLSKDIDMDHQNELMIETAEASSDLTMPLLRYQKEWLAWALKQENSEIRGGILADEMGMGKTIQAIALVLAQRETQKMVCKPDETSSLPGSSSTLPGVKGTLVICPLVAVTQWVSEIDRFTLKGSTKVLVYHGAKRGKYSEEFSNYDFVITTYSTVESEYRKYMMPPKEKCPHCGKSFSHSRLPIHQKYYCGPNSERTEKQSKQFKKKKRKLNIKKIVQMKMGPSDTKLEGKSLLHVVKWQRIILDEAHYIKARQCNTAKAIHALESSYRWALSGTPLQNRVGELYSLIRFLQIVPFSHYLCKDCDCRILDHSSKECSNCQHSSVRHFCWWNKYIATPIQGYGNSDPGRRAMILLKHKVLKNVILRRTKLGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYAESNTVTNNYAHIFDLLTRLRQAVDHPYLVVYSQAASLKAGVEVCNDNVEQVCGLCHDPVDDPVVTSCEHVFCKACLIDFSSSLGRVSCPSCPKLLTVDLSSNKDVGDQTTKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIHYSLLKSGVSCAQLNGSMSLAARDAAIKRFTDDPECKIFLMSLKAGGVALNLTVASHVFIMDPWWNPAVERQAQDRIHRIGQYKPIRIIRIVIENTIEERILKLQEKKELIFEGTVGGSSEALGKLTEEDMRFLFA 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0542 883 MobiDBLite consensus disorder prediction 61 87 - -
Acco08g0542 883 Pfam SNF2-related domain 208 607 IPR000330 GO:0005524|GO:0140658
Acco08g0542 883 CDD DEXDc_SHPRH-like 194 532 - -
Acco08g0542 883 MobiDBLite consensus disorder prediction 1 111 - -
Acco08g0542 883 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 60 883 - -
Acco08g0542 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 882 IPR027417 -
Acco08g0542 883 SMART ring_2 630 669 IPR001841 -
Acco08g0542 883 Gene3D - 196 332 IPR038718 -
Acco08g0542 883 Gene3D - 333 546 IPR038718 -
Acco08g0542 883 Gene3D - 547 882 IPR027417 -
Acco08g0542 883 Pfam RING-type zinc-finger 630 667 IPR027370 -
Acco08g0542 883 CDD SF2_C_SNF 712 839 - -
Acco08g0542 883 ProSiteProfiles Zinc finger RING-type profile. 630 669 IPR001841 -
Acco08g0542 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 874 IPR001650 -
Acco08g0542 883 SMART helicmild6 745 828 IPR001650 -
Acco08g0542 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 686 IPR013083 -
Acco08g0542 883 ProSitePatterns Zinc finger RING-type signature. 645 654 IPR017907 -
Acco08g0542 883 Pfam Helicase conserved C-terminal domain 714 828 IPR001650 -
Acco08g0542 883 SMART ultradead3 190 465 IPR014001 -
Acco08g0542 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 532 IPR027417 -
Acco08g0542 883 Coils Coil 360 380 - -
Acco08g0542 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 460 IPR014001 -
Acco08g0542 883 MobiDBLite consensus disorder prediction 37 54 - -
Acco08g0542 883 SUPERFAMILY RING/U-box 627 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0542 Acco-ChrAcco08 4338061 4344374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0542 115 882 RAD5 or RAD16-like Gene Family AT1G05120 64.736 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco08g0542 SNF2_N 2.2e-54 CL0023