Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0539 ATGGATTGGAGCAGAGGCCAAACCTTAGGCTACGGCTCCTCCGCCACCGTCTCTCTCGCTTCCTCCTCCGGCTCTGAACTCGTCTTCGCCGTCAAGTCATCAGAGCTCTCTTGCTCTCTGTTCTTACAGAGAGAACAGAGTGTCTTATATACTCTGTCCTCTCCTTATATTGTTGCCTATAAAGGGTGTGATGTTACTAGAGAGAACAACAAGCTCTTTTACAATCTCTTCATGGAGTACATGCCATTTGGTACTGTTATTCAGGCTGCTCAACGGCACGGTGGCCGCCTCGACTTGGGAGTGGTTGAGTTTTACACTTGGCAGATTTTGCAAGGGCTGGAGTATTTACATTCCAACGGGTTGGTACATTGTGACATTAAGAGCACCAACATATTGATTGGTGAAGATGGAGCCAAGATTTCGGATTTTGGATGTGCCAAGCGGGTTGATGAGATGGCGGCGCCGATCAGCGGGACGCCAATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTGTGCTGGTGATATTTGGGCACTTGCGTGCACAGTAATCGAAATGGCTTCTGGGGTTTCGCCGTGGCCGAACATGGCGGACCCTTTCTCGGTTCTTCACCGGATCGCATATTCCGGCGAGACACCGGAGATTCCAGGGTTTCTGTCGGATGAAGCAAAGGATTTCTTGGGCAAGTGCTTGAGGAGGGATCCGACAGAGAGATGGACGGCTACTCAATTGTTAAAGCACCCCTTCGTCACGGAATTCAATTCAAAAACCATGGAGAAGGAAATTGAAAAACTCAATTCGAGTTCACCCACATGCGTACTTGAGCATGAGTTTTGGAATTCCATGGAAGAATTTGAAACTCACGGAAATCTGATTCGCACGAGGTTCGAAAATTCAGCAGTTGATGATAGAATCAGAAGGTTAGCTGAGTTCTCAGGAGAACCCACATGGACGCGTGATGATGATAATTGGATCACAATCAGAGGAGCTGATGATGAAGCATCAGCTTCAACCAGCGACGATGCTTTGGAAGAGTCAGTGATCAAAAGCAAAGTTAGAAGTAGAATTAGAAGGTGTATTAGCGGAAATTACGAATTTAGTGAAATTAGTGATGATATGATTAGTACTCATTACAATTTTGAGAGAGGCAGTGTGAATAGGATGACGCTACAGCCTTCCATGTCATTTTATTCATGA 1206 0.4701 MDWSRGQTLGYGSSATVSLASSSGSELVFAVKSSELSCSLFLQREQSVLYTLSSPYIVAYKGCDVTRENNKLFYNLFMEYMPFGTVIQAAQRHGGRLDLGVVEFYTWQILQGLEYLHSNGLVHCDIKSTNILIGEDGAKISDFGCAKRVDEMAAPISGTPMFMAPEVARGEEQGCAGDIWALACTVIEMASGVSPWPNMADPFSVLHRIAYSGETPEIPGFLSDEAKDFLGKCLRRDPTERWTATQLLKHPFVTEFNSKTMEKEIEKLNSSSPTCVLEHEFWNSMEEFETHGNLIRTRFENSAVDDRIRRLAEFSGEPTWTRDDDNWITIRGADDEASASTSDDALEESVIKSKVRSRIRRCISGNYEFSEISDDMISTHYNFERGSVNRMTLQPSMSFYS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0539 401 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Acco08g0539 401 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g0539 401 CDD STKc_MAPKKK 2 253 - -
Acco08g0539 401 FunFam Mitogen-activated protein kinase kinase kinase 17 2 307 - -
Acco08g0539 401 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Acco08g0539 401 SUPERFAMILY Protein kinase-like (PK-like) 2 264 IPR011009 -
Acco08g0539 401 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g0539 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Acco08g0539 401 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g0539 401 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0539 Acco-ChrAcco08 4318824 4320029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0539 1 331 MAP Kinase Kinase Kinase AT1G05100 49.419 2.80e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Acco08g0539 Pkinase 8.1e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3601 01 52424779 52427125 Acco08g0539 08 4318824 4320029 CCT
Acco08g0539 08 4318824 4320029 Acco08g0539 08 4318824 4320029 ECH