Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco08g0511 | ATGTGTAATAATCAAGATACATTGAGACTTGGTTTTGTCAAAATCGTGAAGCAGTGGTATGCCATTCTCAACTGGGAAGCTTCCCCCTTGTCGGATATACGGAAGTGGTTTATGAAATCCCATGACAAGAACAATGCTTCAGAGTCGAAGCCTACGAACCAAGCCAAGCCTTCTCCAGCTAAACCACAACCGATAAAACCAGAAGATGGAGGCCACGATAGTACAGGGAAGAGGAAAACTAGCAAACAAGTTGCCGCTGACAAAAACAAAAAAGATGAAAAAGAGGCACAGGAGCCTCCTGCTAAAAGGAAGAATCCCAAGGACAGTGAGGACTTGCAGAAGCGTTTTCCTAAAAAATTTCATTTAGATGATGATGACGACGACGACTCTGACTTGCTCACATCTAAAAGGAAATCAGTTGATACCACCCCAATAAAAAAATTGAAGAGTGAATCTGGTAGGGAAATTCAACTGAAGTCTCCTGATTTGGAAAAAAGCGATGAGGATAATGTCAAAGATGATCCATTACCCATTAAGTCTGGCGGAAGGGGACGTGGAGGAAGAGGAGCATCAGCACCATCATCTAGTGGATGGGGTAGAGGAGGTGGAAGGGGTGGATTTATGAATTTTGGCGAAAGAAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGATTGTTTGGCTGGTTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATAGGAGGTCGGAAGTCTTCAAAAGCGAGAGAGCTGGGGACGCAATTTCTCACTGAGGATGGGTTGTTTGACATGATTCGTGCATCAAAACCTGCAAAGGCTCCTCCACAGGAAGAATCCAAAAAATTGGTGAATAAGGTTGTAGCAATCCAGTCAAAAAGTTCTCAGAAAGCTGGAGTCAAGGTCTCCCAACCTTCAGGCTCAGCTTCAGCTCCAGTGAAGCCCAAGACAGAAAGTTCTGTACAGTCTTCTTTCATGTGGACAGAAAAGTATCGACCTAAGGTTCTGAATGACATCATAGGAAATCAGTCACTTGTTAAACAGCTTCATGATTGGTTGGCACATTGGAATGAACAATTTCTTGACAGTGGTAAGAAAAAGGGAAAAAAGCAAAGTGACACTGGTTCAAAAAAAGCTGTCTTATTAAGTGGAACCCCTGGCATAGGAAAAACCACTTCAGCAAAGTTGGTCTGTAAGATGCTTGGTTTCCTGGCTATAGAGGTCAATGCTAGTGACAGCCGGGGGAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCAATAATGAATCATTGGGTGCTCAAGCGGATCGGGTGAAGGATTCTAAAACTGTGCTCATCATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGATCTTATCGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGTAATGACCGCTACAGCCAAAAACTGAAGAGTCTTGTGAACTACTGTCTACTGCTTAGCTTTCGAAAACCTACAAAGCAGCAGATGGCAAAGAGGTTGATGCAGGTTGCGAAGGCTGAAGGACTTCAAGTCCAAGAGATTGCTCTTGAGGAGCTCGCAGAAAGAGTTCATGGAGATATGCGCATGGCACTAAATCAGCTACACTATATGAGCCTGTCCAAGTCAGTTATTAACTATGATGACATCAGGCAACGCCTTTTGTCTAGCTCAAAGGATGAGGATATTTCACCATTCACTGCTGTTGATAAGCTTTTCAGTTTTAATGCTGGGAAGTTAAAAATGGATGAGAGGATGAATCTTGGCATGAGTGATCCTGACCTTGTTCCTCTTCTTATTCAGGAAAATTATATTAATTATAGACCAAGTTTGGCTAGTAAAGATGACAATGATGTGAAGCGCATGAAGTTAATTGCCCGTGCTGCCGAGTCCATTGCTGATGGAGATCTAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTTTCTCAAGCTAGTATTCTTGCATCAAGTATAATTCCTGCTTCATTGTTGCATGGGCAAAGGGAAATCCTTGAACAGGGAGAACGGAATTATAATCGGTTTGGTGGTTGGCTTGGGAAAAACTCTACAATGGGCAAAAACTTTAGGCTTTTGGAAGATCTGCAGGTTCACATTCTTGCTTCTCGTGAATCCAGTCCAGGAAGGGAAAGTCTCCGTTTGGATTATCTTAAACCACTTCTTCAACAGTTAACAGGACCACTGCGGGCCTTGCCCAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAACACGTACTCAATCAGTCAAGAGGATTTTGATACTATTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTTGATGGCATAGCGCCTGCTGTTAAATCTGCACTGACAAAAGCGTACAAAGAACAAAGCAAGTCTAGGATGGTTCGAGCCGCAGATCTTGTCACTATTCCTGGAATGAAAAGGCCTGTTAAGAAGCGAATTGCTGCTATCCTAGAACCATCTGACGAAGGACTGGAACAGGGTGAAGGTAATAATGCCCTGGAAGAGAGTGAAGAAGAGAATTCCTCAGATACAGAGGAGTTAGAAGTTACCACCACTGGTGAGAAGCTGCGGTCAGAACTTCAAAGTTTAAATTCAAAGGCCATGCAAGTAGAATTGGATTTGATGGGAACGGGAAGTTCAAGTGCCAAGAAGACACCAGTTGGAAGAGGTAGAGGTGCTTCTGCTTCGGCCGGGAAGGGTAGTCAAGCTTCGAGAGGCGGGGCAAAAAGAAAGAGGTGA | 2940 | 0.4327 | MCNNQDTLRLGFVKIVKQWYAILNWEASPLSDIRKWFMKSHDKNNASESKPTNQAKPSPAKPQPIKPEDGGHDSTGKRKTSKQVAADKNKKDEKEAQEPPAKRKNPKDSEDLQKRFPKKFHLDDDDDDDSDLLTSKRKSVDTTPIKKLKSESGREIQLKSPDLEKSDEDNVKDDPLPIKSGGRGRGGRGASAPSSSGWGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKARELGTQFLTEDGLFDMIRASKPAKAPPQEESKKLVNKVVAIQSKSSQKAGVKVSQPSGSASAPVKPKTESSVQSSFMWTEKYRPKVLNDIIGNQSLVKQLHDWLAHWNEQFLDSGKKKGKKQSDTGSKKAVLLSGTPGIGKTTSAKLVCKMLGFLAIEVNASDSRGKADSKIVKGISGSNANSIKELVNNESLGAQADRVKDSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVQEIALEELAERVHGDMRMALNQLHYMSLSKSVINYDDIRQRLLSSSKDEDISPFTAVDKLFSFNAGKLKMDERMNLGMSDPDLVPLLIQENYINYRPSLASKDDNDVKRMKLIARAAESIADGDLVNVQIRRYRQWQLSQASILASSIIPASLLHGQREILEQGERNYNRFGGWLGKNSTMGKNFRLLEDLQVHILASRESSPGRESLRLDYLKPLLQQLTGPLRALPKDEAVQKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIAPAVKSALTKAYKEQSKSRMVRAADLVTIPGMKRPVKKRIAAILEPSDEGLEQGEGNNALEESEEENSSDTEELEVTTTGEKLRSELQSLNSKAMQVELDLMGTGSSSAKKTPVGRGRGASASAGKGSQASRGGAKRKR | 979 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco08g0511 | 979 | MobiDBLite | consensus disorder prediction | 935 | 979 | - | - | |
| Acco08g0511 | 979 | Gene3D | - | 363 | 550 | IPR027417 | - | |
| Acco08g0511 | 979 | MobiDBLite | consensus disorder prediction | 898 | 912 | - | - | |
| Acco08g0511 | 979 | MobiDBLite | consensus disorder prediction | 211 | 226 | - | - | |
| Acco08g0511 | 979 | CDD | HLD_clamp_RFC | 551 | 609 | - | - | |
| Acco08g0511 | 979 | Gene3D | - | 623 | 732 | - | - | |
| Acco08g0511 | 979 | MobiDBLite | consensus disorder prediction | 333 | 357 | - | - | |
| Acco08g0511 | 979 | ProSiteProfiles | BRCT domain profile. | 227 | 308 | IPR001357 | - | |
| Acco08g0511 | 979 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 363 | 611 | IPR027417 | - | |
| Acco08g0511 | 979 | FunFam | Replication factor C subunit 1 | 551 | 622 | - | - | |
| Acco08g0511 | 979 | Pfam | ATPase family associated with various cellular activities (AAA) | 418 | 506 | IPR003959 | GO:0005524|GO:0016887 | |
| Acco08g0511 | 979 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 42 | 966 | - | - | |
| Acco08g0511 | 979 | FunFam | Replication factor C subunit 1 | 363 | 550 | - | - | |
| Acco08g0511 | 979 | Gene3D | - | 551 | 621 | - | - | |
| Acco08g0511 | 979 | PIRSF | RFC1 | 29 | 953 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Acco08g0511 | 979 | Gene3D | BRCT domain | 204 | 307 | IPR036420 | - | |
| Acco08g0511 | 979 | MobiDBLite | consensus disorder prediction | 66 | 179 | - | - | |
| Acco08g0511 | 979 | Pfam | Replication factor RFC1 C terminal domain | 691 | 853 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Acco08g0511 | 979 | SMART | AAA_5 | 414 | 552 | IPR003593 | GO:0016887 | |
| Acco08g0511 | 979 | MobiDBLite | consensus disorder prediction | 42 | 228 | - | - | |
| Acco08g0511 | 979 | MobiDBLite | consensus disorder prediction | 884 | 922 | - | - | |
| Acco08g0511 | 979 | FunFam | Replication factor C subunit 1 | 203 | 306 | - | - | |
| Acco08g0511 | 979 | Pfam | BRCA1 C Terminus (BRCT) domain | 229 | 304 | IPR001357 | - | |
| Acco08g0511 | 979 | FunFam | Replication factor C subunit 1 | 623 | 732 | - | - | |
| Acco08g0511 | 979 | SMART | BRCT_7 | 229 | 307 | IPR001357 | - | |
| Acco08g0511 | 979 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 622 | 767 | IPR008921 | GO:0003677|GO:0006260 | |
| Acco08g0511 | 979 | Coils | Coil | 920 | 940 | - | - | |
| Acco08g0511 | 979 | SUPERFAMILY | BRCT domain | 227 | 308 | IPR036420 | - | |
| Acco08g0511 | 979 | CDD | AAA | 411 | 514 | - | - | |
| Acco08g0511 | 979 | CDD | BRCT_RFC1 | 227 | 305 | - | - | |
| Acco08g0511 | 979 | MobiDBLite | consensus disorder prediction | 935 | 951 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco08g0511 | 30 | 933 | Core DNA Replication Machinery Family | AT5G22010 | 68.087 | 0.0 | 1100 |