Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0494 ATGGATGAAATCGAAGTTCCTCGGTATTTCGTGTGTCCGATTTCGCTTCAGATCATGAAGGACCCTGTCACAACACTCACCGGCATAACCTACGACAGAGAAAGCATCGAACAATGGCTGCTCAAAGCTAAAGAACACAAGTGTCCAGTCACGAAGCAGCCATTGCCCAGAGGCTCCGATCTCACCCCCAACCACACCCTGCGCCGTCTCATCCAGGCTTGGTGCTCGGAAAACGCCGCTCTCGGCGTCGATCGCATCCCTACCCCTAAATGCCCTCCCACCAAAACCCTCCTCCAGAAACTTATCAGAAATCTCAGTCTTCCCCATCTCTACCAATCCGCATTGGATAGATTCCATACTCTTGCCACAGAGAACGAAAGAAACCTCAAGTGCATGGCGGAATCTGGCGTGGCCGAGTCCATGATTCATCTGATTACCAACAAGTCCAACGAGTTAGGTGACAGCAACACTGATTATTCCCTTGAACTCGAACAATCTCTGCGAATTCTACGCCTGATCTGGGGTACTAGTTGTGACAACATCAAGCCTCTTCTCGTCCACAACATTGACTTCATCAACTCACTGACTCGGATTCTCCATCTGCACGACGTGGACACCAACGTCAATTTGATAAACGAAGCAATGCCCGTGTTAAAATCCGCCATCGAACTCGCAGATTCAACCCTTTTAGGAAGTTTGAAACCCGAATTCTTCATCGAAATCACAAGAATACTCAGAAACAGGTCAATCTCACAACAAGCCGTGACGTCCGCCTTGAAAATTCTCATAGAAACGTGTCCTCTAGGTAGAAACAGAACGAGAATAGTGGAAACAGGGGCAGTATATGAGTTGATCCAACTTGAGCTAGAGATTAATACTGAGAAGAACATAACGGAGCTTAAATTTAACCTCCTTGCGCAGCTATGTTCGTGTGCGGACGGGAGGGAACACTTCTTGTCCCACGCGGCGGGGATCGCGGTGGTGTCGAAGAGGGTTCAGAGGGTGTCTCCGGTGACAGATGATAGGGCGCTTCACGTGTTGTGGTTGGTGGCGAGGTACTCGGGGTCAAACGGCGTCGTTTTGGAGATGTTGAGGGTGGGAGCTGTATCCAAGCTTTGCATGCTGATTCAGGCCAGTTGTGATCCCAGTTTGAAAGAGAAAGCGAGATCAATTCTGAGGTTACATTCCAATATTTGGAATGATTCGCCTTGTATTCAAGCTTATCTGTTAACCAGGCACCAAAGGTGA 1248 0.4872 MDEIEVPRYFVCPISLQIMKDPVTTLTGITYDRESIEQWLLKAKEHKCPVTKQPLPRGSDLTPNHTLRRLIQAWCSENAALGVDRIPTPKCPPTKTLLQKLIRNLSLPHLYQSALDRFHTLATENERNLKCMAESGVAESMIHLITNKSNELGDSNTDYSLELEQSLRILRLIWGTSCDNIKPLLVHNIDFINSLTRILHLHDVDTNVNLINEAMPVLKSAIELADSTLLGSLKPEFFIEITRILRNRSISQQAVTSALKILIETCPLGRNRTRIVETGAVYELIQLELEINTEKNITELKFNLLAQLCSCADGREHFLSHAAGIAVVSKRVQRVSPVTDDRALHVLWLVARYSGSNGVVLEMLRVGAVSKLCMLIQASCDPSLKEKARSILRLHSNIWNDSPCIQAYLLTRHQR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0494 415 Gene3D - 94 408 IPR011989 -
Acco08g0494 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Acco08g0494 415 CDD RING-Ubox_PUB 7 55 IPR045210 -
Acco08g0494 415 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Acco08g0494 415 SUPERFAMILY RING/U-box 3 84 - -
Acco08g0494 415 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Acco08g0494 415 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Acco08g0494 415 SUPERFAMILY ARM repeat 107 394 IPR016024 -
Acco08g0494 415 PANTHER WDSAM1 PROTEIN 3 406 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0494 Acco-ChrAcco08 3948067 3949314 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0494 2 405 U-box Gene Family AT2G35930 42.506 8.67e-108 322