Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0490 ATGGCTTCCACGTACTTTCATGGCGGGAATTCTGAGATCCAACCTTCAGGGGATGGTTTACAGACACTTTACCTTATGAATCCAACCTACGTACCTTACTCTGACAGTACCTCTCACCACCACCCCACAACCCCTAATATGCTTTTCTTCAATCCCAACACTTCCCCTTCTCCCCACGCGCCCAACCTCCCCCACGCGCCGCCTCCTCCTTCCCGGACTCCCCACCACCACCTACTTGGTGTCATCCCAACCAACATGGTCGGATCCGAAAACTCCGACATCGCTGCCTTCCATGGCTTTGCCTCTGCCACCGCGGCCACCACTTCTGCTGCGCCGCGGGTTCATAACTTGTGGGGTTCCATAATCGATCATCAACAAACACCGTCATCCCCAGCGGCAGTGTTGGCAGCAACCGCGCCCAGCAGTTCAGGTATGGCTGCTACTGCCGGTTTCCGAAGGCCGAGTCAGCAAGGTTTGTCACTAAGCCTTTCGTCGCAGCAGACAGCTTTTAATAGGTCGCTTTCTGGCGAGCTCGATGTCCCGGGACAAGGACAATCCCGAGTTTCTGCTATATCGCCAACGAGCCATGTCGGTGGTGGTGGGGGTAATGATATGCAGATTCTGGGGAACTCTCCTTTGTCGTCGTCGGTGTCAAACGGAATTCCGAGTATGCAGAGCGCGATTTTGGGGTCTAAATATCTGAAGGCGGTGCAAGAGCTTCTGGATGAAGTTGTGAATGTGGGGAAGGGAATTGAGAAAAGGGGTTCGATAGAGATTGAAGCGAGTAGTGATAAAGAGAAGATGAAAGTGAATAAATCATCAGAATCGGAATTTGGAAATATCGGTGGCGACGGTGGTTCAAGTGGCGGCAAGCAAGCATCTGAACTCAGCACCGCCCAACGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTTTCCATGCTTGATGAGGTGGAACAAAGGTACACGCAGTACAGGCACCAAATGCAGATACTGATATCTTCGTTTGAACAAGCAGCAGGATATGGTGCGGCCAAGTCATACACAGCACTTGCATTAGAGACAATATCGAAGCAATTTCGATGTCTTAAGGATGCAGTGTCTAGTCAGATCAAAGCAACCAGCAAGAGCCTCGGCGAAGACGATTACTTAGGAGCTAAGGTACAAGGTTCAAGGCTCCGGTATGTCGATCACCATCTCCGGCAACAGCGAGCTCTGCAGCAGCTGGGAATGATACAGCACAATGCTTGGAGGCCCCAGAGGGGATTGCCTGAACGCGCTGTCTCTATTCTTCGTGCTTGGCTCTTTGAGCACTTTCTTCACCCTTATCCCAAGGACTCTGATAAAGTTATGCTTGCAAAACAAACTGGACTTACTCGAAGCCAGGTATCAAACTGGTTTATAAATGCTCGAGTTCGGCTGTGGAAACCAATGGTAGAAGAAATGTACTTGGAAGAAACCAAGGAGCAGAACAATGAGTCCAACCCAAAGGACAAGAACACCAATAGATCATCAAAAGAATCAAACAAGGACCCAAATAATAATGAAGCTCACGAAGAATCAGGTTCCTTTAATATTAGATCATCATTTGAAGCTCTCCAATCAAAAACAGATCATCATCAAACATCATTCAACAACCAAACCACCATCACTAGTTCCCTACACGACCTCTCAAATCATCCTAATGATCCAATGGGTGTCACTAACGTTTCAATGGACGTGGAAATGAAGCCCCGGTTTGTTAAAGACGGGTATAACAACTCGTTATTAAGTGAAGAGGGTTATGGAGGATTAATCTCAATGCAAGACATTGGAAGGTTTAACGTTAGTAATGTTTCTGAACAGCGTTTAGCTCCGAGGTTTCATGGGAATGGTGTTTCCCTCACTTTGGGACTCCCTCATCACACTGACAACCTTTCTCTCTCTGCAACTCAACATCATAGCTTTCTCTCTCACAATATACATTTGGGAACCAATGATGCCACTGAGCTTTGTGCCATCAACGCTGCTGCGGCAGCTGCCGCCACCGCTCCTCCGCCATCTTCTCATTCAGGCGCGGCCACCAGCTATGATAATATTGATATTCAGAACAGAAAGAGCTATGCAGCTCAGTTGTTGCCGGATTTTGTCACCTGA 2136 0.4831 MASTYFHGGNSEIQPSGDGLQTLYLMNPTYVPYSDSTSHHHPTTPNMLFFNPNTSPSPHAPNLPHAPPPPSRTPHHHLLGVIPTNMVGSENSDIAAFHGFASATAATTSAAPRVHNLWGSIIDHQQTPSSPAAVLAATAPSSSGMAATAGFRRPSQQGLSLSLSSQQTAFNRSLSGELDVPGQGQSRVSAISPTSHVGGGGGNDMQILGNSPLSSSVSNGIPSMQSAILGSKYLKAVQELLDEVVNVGKGIEKRGSIEIEASSDKEKMKVNKSSESEFGNIGGDGGSSGGKQASELSTAQRQELQMKKSKLVSMLDEVEQRYTQYRHQMQILISSFEQAAGYGAAKSYTALALETISKQFRCLKDAVSSQIKATSKSLGEDDYLGAKVQGSRLRYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQNNESNPKDKNTNRSSKESNKDPNNNEAHEESGSFNIRSSFEALQSKTDHHQTSFNNQTTITSSLHDLSNHPNDPMGVTNVSMDVEMKPRFVKDGYNNSLLSEEGYGGLISMQDIGRFNVSNVSEQRLAPRFHGNGVSLTLGLPHHTDNLSLSATQHHSFLSHNIHLGTNDATELCAINAAAAAAATAPPPSSHSGAATSYDNIDIQNRKSYAAQLLPDFVT 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0490 711 SUPERFAMILY Homeodomain-like 418 483 IPR009057 -
Acco08g0490 711 MobiDBLite consensus disorder prediction 486 523 - -
Acco08g0490 711 Pfam Homeobox KN domain 434 473 IPR008422 GO:0003677|GO:0006355
Acco08g0490 711 MobiDBLite consensus disorder prediction 266 300 - -
Acco08g0490 711 Pfam Associated with HOX 228 368 IPR006563 -
Acco08g0490 711 MobiDBLite consensus disorder prediction 35 56 - -
Acco08g0490 711 ProSiteProfiles 'Homeobox' domain profile. 414 477 IPR001356 GO:0003677
Acco08g0490 711 SMART HOX_1 417 481 IPR001356 GO:0003677
Acco08g0490 711 MobiDBLite consensus disorder prediction 486 517 - -
Acco08g0490 711 CDD homeodomain 417 478 IPR001356 GO:0003677
Acco08g0490 711 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 132 504 - -
Acco08g0490 711 Coils Coil 301 321 - -
Acco08g0490 711 MobiDBLite consensus disorder prediction 35 75 - -
Acco08g0490 711 FunFam BEL1-like homeodomain protein 9 420 482 - -
Acco08g0490 711 SMART prehox3 222 369 IPR006563 -
Acco08g0490 711 Gene3D - 420 501 - -
Acco08g0490 711 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0490 Acco-ChrAcco08 3896409 3900067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0490 3 710 Homeobox Transcription Factor Family AT2G35940 40.903 6.95e-129 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Acco08g0490 POX 2e-47 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3622 01 52612374 52615384 Acco08g0490 08 3896409 3900067 CCT