Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0486 ATGGGAGTTAACCGTACGAATTTCTGCATTTTTCTCATTTTTTGCCTGATTGTGGTGATATACGGTGCCACAGACCCAAATGATGTCAAAATTCTGAATGATTTCAAAAAAGGTTTGGAGAATCCGGAGCTTCTTAAATGGCCAGACAATGGAGACGATCCTTGTGGTCCTCCTTCATGGCCTTATGTGTTCTGTGCTGGTAATAGAGTCACACAGATTCAGGCCAAGTCTCTGGGTCTTAAAGGAACATTACCTCCATCCTTTAATCAGCTCTCAGAACTCTTCAATTTAGGCCTTCAACACAACAAGCTTAGTGGGATGCTGCCGACTTTTAGTGGATTATCCAAATTGGAATTTGCTTTCCTAAATGACAATCAATTTGATGGGATCCCATCTGATTTCTTTGATGGTCTAAGCAGTATTCGCGATTTAGCTTTGGCAGAAAATTCGTTGAATGGGAGTACCGGGTGGTCTCTTCCTGCGAGTTTAGAAAACTCAGAACAATTAACGAATCTTTCTCTTGTGCACTGTAATTTGGTTGGGCCAGTACCTGATTTTTTGGGCACATTGCCGTCTCTTTCAAATTTGTTACTTTCATACAACCGATTGTCTGGCCGTATTCCTAGCAGCTTTGGTCAGTCTTCCATGCAGGTTTTGTGGTTGAATAACCAAGATGGTGGTGGGATGACTGGTCCAATTGATGTTATTGCTTCAATGACTTCTCTAACCCAGCTTTGGCTTCATGGAAATCAGTTCACTGGCACAATTCCAGAGAATATTGGAAATCTAACTTCCTTGAGGGATCTCAATCTCAATAGTAATCAACTCGTTGGCTTGGTTCCTGAAGGCTTGGCCAATATGGAACTTCAGAATTTGGTGTTAAACAACAACAGGCTCATGGGTCCTATACCAAAGTTTAAGGCTACAAACGTTTCTTATGATTTCAATTTCTTTTGTCAAAAGAAGCCAGGCGATGAATGCCCCCCTAAAGTTACCGCTCTGCTTGATTTTCTCAGTAATCTGAATTACCCTTCAATGCTCGCTTCTCAATGGTCTGGTAATGAACCGTGTACTGGACCATGGCTGGGATTAAGCTGCAATCCCAAGTCAGAGGTATCAATTATTAACCTTCCCCACCACAGGCTCAATGGTACTCTAAACCCCTCACTTGCTAAGTTAGCTTCACTCCTTGAGATCAGGCTTGGAGGGAATAATTTAACTGGCCAAATTCCTAGCAGTTTCACTGAATTGAAATCTTTGAAACTGTTGGATTTAAGTGGTAATAATCTTGAGCCCCCATTGCCAAATTTACAAGGTGTGAAGATTGTTCTTGATGGCAACCCTCTTTTTGACAACCGAACAAGAAGTTCCCAGCCTATCAGCAGCCCACCGCCTTCGAGTTCACAATCTTCACCTCACAATCCATCTCCATCCTCTGAAAGCCCACCTTCCTCAAGTCAGAGTCCAAGCTCAAATGCATCAAGGTCAGGACAAGTACAATCACAACAAGATAAACCTAAAAGGTTCAGAACACTAGCAATAGTGGCTGGAGCTGCAGTTTTTGCTATTGTAGCTATTTTGGTTATCTTCCTATCCATATATTGCTCAAAGAAGAAGAAGAAAACATTGTTAGATGATTCTAGTTCCATTGTGGTTCACCCTCGAGACCCATCCAATCCAGATGTGGTTAAAATTGCTGTAGCAGACAAAACTGCGGGAAGCTTATCGTCGAATACTGGGACAAGTTCTTTGAGAAACATTAATGATGAACCTGAAAGCTCTCATGTGATTGATGCTGGTAGTCTTGTCATCTCAGTTCAAGTTTTACGTAAGGTTACCAAGAATTTTTCACCCGAAAATGAGCTAGGCCATGGTGGGTTTGGGACTGTCTATAAAGGTGAACTAGAAGATGGGACGAAAATAGCAGTGAAGAGGATGGAGAGTGGAGTTATGAGCAGGAAAGCACTGCATGAGTTTCAGGCTGAAATAGCTGTTCTTTCTAAGGTTCGTCACCGGCATTTAGTATCTCTGTTGGGATACTCCATTGAAGGCAATGAAAGACTTTTGGTGTATGAATATATGCCTCTGGGTGCTCTAAGTAGGCATCTTTTTCATTGGAAAAGCCTGAAATTGGAGCCTTTGACTTGGTCGCAAAGGCTTGTGATAGCACTAGATGTTGCTAGAGGAATGGAATACCTCCATGGTCTTGCCCGCCAGATCTACATCCACCGAGACCTCAAGCCTTCTAATATTCTTCTTGATGAAGATTTACGAGCAAAAGTTTCAGATTTTGGCCTGGTGAAACTTGCCCCAGATGGTGAGAAGTCTGTGGTAACTACGCTTGCTGGGACGTTTGGATATCTTGCCCCCGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTATGGCGTGGTGTTGATGGAACTTCTGACTGGACTGATGGCTCTTGATGAGAGCCGGCCAGAGGAGAACCGATACCTAGCGCAGTGGTTTTGGCAGATTAAGTCAAGCAAAGAAAAGCTTATGGCAGCCATTGATCCTGCTCTTGAGGCAACTGAGGAGATTTTTGAAAGCATCTCCATTATAGCGGAACTTGCTGGACATTGCACTGCCAGGGAACCAAATCACCGACCAGATATGAGTCATGCAGTCAATGTATTGGCTGCATTAGTAGAGAAATGGGTGCCGATGGACGATGAATCAGATTGCTTTACTGGCATTGAATTCGGACGACCACTTTCACAGATGTTGAAAGATTGGAGGGAAGCAGGAAGCAGAGATGTTAGTTATGCTAGCCTTGAAGACAGCAAAGGCAGCATACCTGCTAAGCCTGTTGGTTTTGCTGACTCCTTTTCTTCTGCTGATGCTCGATAA 2889 0.4323 MGVNRTNFCIFLIFCLIVVIYGATDPNDVKILNDFKKGLENPELLKWPDNGDDPCGPPSWPYVFCAGNRVTQIQAKSLGLKGTLPPSFNQLSELFNLGLQHNKLSGMLPTFSGLSKLEFAFLNDNQFDGIPSDFFDGLSSIRDLALAENSLNGSTGWSLPASLENSEQLTNLSLVHCNLVGPVPDFLGTLPSLSNLLLSYNRLSGRIPSSFGQSSMQVLWLNNQDGGGMTGPIDVIASMTSLTQLWLHGNQFTGTIPENIGNLTSLRDLNLNSNQLVGLVPEGLANMELQNLVLNNNRLMGPIPKFKATNVSYDFNFFCQKKPGDECPPKVTALLDFLSNLNYPSMLASQWSGNEPCTGPWLGLSCNPKSEVSIINLPHHRLNGTLNPSLAKLASLLEIRLGGNNLTGQIPSSFTELKSLKLLDLSGNNLEPPLPNLQGVKIVLDGNPLFDNRTRSSQPISSPPPSSSQSSPHNPSPSSESPPSSSQSPSSNASRSGQVQSQQDKPKRFRTLAIVAGAAVFAIVAILVIFLSIYCSKKKKKTLLDDSSSIVVHPRDPSNPDVVKIAVADKTAGSLSSNTGTSSLRNINDEPESSHVIDAGSLVISVQVLRKVTKNFSPENELGHGGFGTVYKGELEDGTKIAVKRMESGVMSRKALHEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKSLKLEPLTWSQRLVIALDVARGMEYLHGLARQIYIHRDLKPSNILLDEDLRAKVSDFGLVKLAPDGEKSVVTTLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEENRYLAQWFWQIKSSKEKLMAAIDPALEATEEIFESISIIAELAGHCTAREPNHRPDMSHAVNVLAALVEKWVPMDDESDCFTGIEFGRPLSQMLKDWREAGSRDVSYASLEDSKGSIPAKPVGFADSFSSADAR 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0486 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672|GO:0006468
Acco08g0486 962 Pfam Protein kinase domain 619 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g0486 962 MobiDBLite consensus disorder prediction 480 505 - -
Acco08g0486 962 MobiDBLite consensus disorder prediction 465 479 - -
Acco08g0486 962 FunFam Leucine-rich repeat receptor-like kinase 329 453 - -
Acco08g0486 962 SMART serkin_6 616 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g0486 962 MobiDBLite consensus disorder prediction 452 505 - -
Acco08g0486 962 ProSiteProfiles Protein kinase domain profile. 616 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g0486 962 Gene3D Phosphorylase Kinase; domain 1 577 693 - -
Acco08g0486 962 ProSitePatterns Protein kinases ATP-binding region signature. 622 644 IPR017441 GO:0005524
Acco08g0486 962 Pfam Leucine rich repeat N-terminal domain 332 367 IPR013210 -
Acco08g0486 962 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Acco08g0486 962 PANTHER OSJNBA0070M12.3 PROTEIN 9 962 - -
Acco08g0486 962 SMART LRR_typ_2 239 262 IPR003591 -
Acco08g0486 962 SMART LRR_typ_2 263 286 IPR003591 -
Acco08g0486 962 SMART LRR_typ_2 114 137 IPR003591 -
Acco08g0486 962 SMART LRR_typ_2 417 439 IPR003591 -
Acco08g0486 962 SMART LRR_typ_2 91 113 IPR003591 -
Acco08g0486 962 SMART LRR_typ_2 190 214 IPR003591 -
Acco08g0486 962 SMART LRR_typ_2 393 416 IPR003591 -
Acco08g0486 962 Gene3D Transferase(Phosphotransferase) domain 1 694 908 - -
Acco08g0486 962 FunFam Receptor-like kinase TMK4 26 324 - -
Acco08g0486 962 SUPERFAMILY Protein kinase-like (PK-like) 596 892 IPR011009 -
Acco08g0486 962 CDD STKc_IRAK 622 892 - -
Acco08g0486 962 Gene3D Ribonuclease Inhibitor 329 452 IPR032675 -
Acco08g0486 962 MobiDBLite consensus disorder prediction 939 962 - -
Acco08g0486 962 FunFam receptor protein kinase TMK1 694 911 - -
Acco08g0486 962 FunFam receptor protein kinase TMK1 578 693 - -
Acco08g0486 962 SUPERFAMILY L domain-like 30 438 - -
Acco08g0486 962 Gene3D Ribonuclease Inhibitor 25 325 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0486 Acco-ChrAcco08 3826244 3829459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0486 90 907 Receptor kinase-like Gene Family AT1G55610 31.542 3.73e-85 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Acco08g0486 Pkinase 2.6e-46 CL0016