Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0473 ATGTCTTCTTCCTCTCATCCCCCTGACCAGATCATTCACTCCATGAAACGACAACTCCCATTCTCTTCTATGAAACCGTCCTTTTTTGCTCCCGCCGATTATCATCGCTTTTCGCCCGACCAGCGCCGACCTGCTGACCAAGAAGCCGAAACCATCGTCGTTAAGTCCCCTCCATTGAAGCGAAAGGTTACCACAGCCAATTCTGAAGCTGATTCCGTTGATAGGATGAACCCAGGATCTAATGAAGCAGCTCATAGCCCCTTTCAGACTCCAATGTCAGGAAAAATGGGCAAGGCAAGCAAAGGATCAAAGCTTTCAAAATGCAGCAAAGCTGGACCTCAAACCCCAGGATCTAATGTTGGTTCTCCTTCTGGCAACAATCTTACTCCAGCTGGTCCATGTCGTTACGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTCATCAACTTGATCAAGCAAGCTGAGGATGGTATTCTTGATTTGAATAAAGCCGCTGATACATTAGAGGTGCAAAAGAGGAGAATATATGATATAACAAACGTTCTTGAAGGGATTGGTCTTATAGAAAAGAAGCTCAAAAACAGAATTCAATGGAAGGGATTGGACGTGTCAAGGCCAGGGGAGGCTGATGATAGTTTTTCTAGTTTGCAGACAGAAGTTGAAAACCTTACTATGGAGGAGCGCCAGTTAGATGATCAAATAAGGGAGATGCAAGAAAGACTGAGGAAACTTAGTGAAGATGAAAACAATCAGAAGTGGCTTTTTGTCACGGAAGATGATATAAAGGGTTTGCCCTGCTTCATGAACGAAACCTTAATAGCTATTAAAGCTCCCCATGGCACCACCCTCGAGGTCCCTGATCCCGATGAGGCTGTTGATTATCCCCAAAGGAGATACAGGATAATCCTCAGAAGCACAATGGGCCCGGTAGATGTTTACCTTGTCAGTCAATTTGAAGAAAAATTTGAGGAGATCAATGGAATTGATGCGCTACCCAATCTTCCATCCAGTCCAGAGTTTAACAGGCATCCTGCAACAGTGATCACTGAGGATATAAGAAAAGGCAAAGAAATGCAGGAACAAGATGGTCATTCTGATTTAAGTGCCTCACAGGACTTCGTTAGTGGGATCATGAAGATTGTTCCGTCAGATGTTGATAGTGATGCTGATTACTGGCTTCTATCAAATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGAATTGGATGGAACGAACTGGACACACTTAATGAAGATTATTGCATGCCTCAAGAGAGCACGGCACAACCTGAGACTCCTCCAAACACAAGTCTGGTGCCTCCTACCGCTAATCCAAAAGAAGGCTGA 1356 0.4425 MSSSSHPPDQIIHSMKRQLPFSSMKPSFFAPADYHRFSPDQRRPADQEAETIVVKSPPLKRKVTTANSEADSVDRMNPGSNEAAHSPFQTPMSGKMGKASKGSKLSKCSKAGPQTPGSNVGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFSSLQTEVENLTMEERQLDDQIREMQERLRKLSEDENNQKWLFVTEDDIKGLPCFMNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIILRSTMGPVDVYLVSQFEEKFEEINGIDALPNLPSSPEFNRHPATVITEDIRKGKEMQEQDGHSDLSASQDFVSGIMKIVPSDVDSDADYWLLSNADVSITDMWRTESGIGWNELDTLNEDYCMPQESTAQPETPPNTSLVPPTANPKEG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0473 451 Coils Coil 213 247 - -
Acco08g0473 451 MobiDBLite consensus disorder prediction 61 75 - -
Acco08g0473 451 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
Acco08g0473 451 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Acco08g0473 451 SUPERFAMILY "Winged helix" DNA-binding domain 135 198 IPR036390 -
Acco08g0473 451 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
Acco08g0473 451 Gene3D - 129 202 IPR036388 -
Acco08g0473 451 FunFam E2F transcription factor 1 129 202 - -
Acco08g0473 451 CDD E2F_DD 211 317 IPR032198 GO:0046983
Acco08g0473 451 MobiDBLite consensus disorder prediction 32 130 - -
Acco08g0473 451 SUPERFAMILY E2F-DP heterodimerization region 213 317 IPR037241 -
Acco08g0473 451 Coils Coil 151 171 - -
Acco08g0473 451 PANTHER TRANSCRIPTION FACTOR E2F 76 411 IPR015633 GO:0000978|GO:0006357
Acco08g0473 451 Gene3D - 207 317 - -
Acco08g0473 451 MobiDBLite consensus disorder prediction 427 451 - -
Acco08g0473 451 MobiDBLite consensus disorder prediction 107 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0473 Acco-ChrAcco08 3730382 3734531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0473 14 436 E2F-DP Transcription Factor Family AT5G22220 58.278 4.06e-160 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Acco08g0473 E2F_CC-MB 2.2e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g0473 08 3730382 3734531 Acco08g0473 08 3730382 3734531 ECH