Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0398 ATGGATTTTGAGAATGGATCTTCCTCTACTTCTCCATGCTCAACACCAAACCCTAGCTCTGCTGCATCTCACAAAAGGAAAGCAGGAAGAAAGAAATTTCGAGAGACTCGACATCCACTCTTTCATGGTGTCCGGCGAAGAAATGGTGACCGGTGGGTTAGTGAAGTCCGGGAACCCAACAAGAAGTCCAGGATTTGGCTGGGTACTTACCCTAATCCAGAAATGGCGGCTAGGGCACATGACGTGGCTGCCCTAGCTCTCCGAGGCAGCTCTGCTGCTCTCAATTTCCCCGACTTGGCTCGGCTCCTGCCGGCCGCTACCTCATCCTCCCCCCACGACATCAGAGCAGCCGCGGCTGAAGCCGCACATGCTTTCAGACCAACCTCCACCTCCTCAAATGCTCATCATCACAACATTAATAAATCAAAGCCTTTGTCAGTTGAAGATAATAAGGAAAAGAGGAATGAAGAAGGTGATGAGTTCTTGGACGAGGAAGCATTGTATAACATGCCGAGTCTGTTACGTCATATGGCGGAGGGCTTGCTTCTTGGCCCTCCTTTTGTCTGCTGGAGGACCTTAGGTCTCGGTTTGGACGACGACAACGACTGTCAAATAGACTTGGCTTTATGGCCAGATGACTAA 642 0.5047 MDFENGSSSTSPCSTPNPSSAASHKRKAGRKKFRETRHPLFHGVRRRNGDRWVSEVREPNKKSRIWLGTYPNPEMAARAHDVAALALRGSSAALNFPDLARLLPAATSSSPHDIRAAAAEAAHAFRPTSTSSNAHHHNINKSKPLSVEDNKEKRNEEGDEFLDEEALYNMPSLLRHMAEGLLLGPPFVCWRTLGLGLDDDNDCQIDLALWPDD 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0398 213 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Acco08g0398 213 MobiDBLite consensus disorder prediction 1 22 - -
Acco08g0398 213 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Acco08g0398 213 MobiDBLite consensus disorder prediction 141 157 - -
Acco08g0398 213 MobiDBLite consensus disorder prediction 122 157 - -
Acco08g0398 213 CDD AP2 39 99 IPR001471 GO:0003700|GO:0006355
Acco08g0398 213 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Acco08g0398 213 MobiDBLite consensus disorder prediction 24 41 - -
Acco08g0398 213 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Acco08g0398 213 PRINTS Ethylene responsive element binding protein signature 79 99 IPR001471 GO:0003700|GO:0006355
Acco08g0398 213 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Acco08g0398 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 210 IPR045277 GO:0003700
Acco08g0398 213 MobiDBLite consensus disorder prediction 1 55 - -
Acco08g0398 213 MobiDBLite consensus disorder prediction 125 140 - -
Acco08g0398 213 Pfam AP2 domain 41 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0398 Acco-ChrAcco08 3134623 3135264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0398 8 213 AP2-EREBP Transcription Factor Family AT5G51990 49.282 6.47e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco08g0398 AP2 9e-12 CL0081