Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0379 ATGGAGGATAGTACGTTCACCCCGTCTTTGAACTCCCCGCAGACCGAACAACACTTGGCAAGTACGGCTGACATTAACGGGCCCTCTCTTACCGTTGGGGTCCAGAACTCCGCCGCCGGAGGAAATTCCGAGGCTTCCGGTTTGGAGGTTGGGTTGAAGAGGAAAAGAGGAAGGCCTCGGAAGAACGATGAAAACCCTCCGTCACCAAATTCGGCGCCGCCAGGATTTCCAACCTCTCCATCCTCCAAGCGAGGCAGAGGAAGGCCACGCGGCTCTGGAAAATTGCAGACGCTGGCTTCAATGGGAGGAATATTTTCAGCCACGGCGGGAGGATGCTTCATCCCTCATGTACTGACTGTGAATCCTGGGCAGGATGTTGTGAAAAACATAATGTCATTTTCTCCTAAAGGCCATCGAGCTTTTTGCATACTCTCAGCTATTGGAGTTGTTAAGGTTGTCGAAATTATGCAGCCTGATTCTTGTTGTCGTCGTTGGGTGAGATGTGAGGGTGTCTTTGAGATAGTAAATTTATCTGGATCACATACCTATGGTGATAAAAATCAGACAAATCTCGCCATGAGGGTTTTACTAGCTAAACCTGATGGGATGATTTTCGGAGGTGCAATCGGGGGCTCACTGATAGCGGCTGGCCCTATTCAAATAATTCTGGGAACTTTTAAGCAAAATATCAATAGTGGTATCAAAAGGCTGCTGTCCCCTGGAGAATCTTCTGGTGCTGCTGGCGACGCGCCTGGCAATTCAGATGGAGCGAGGCTTTCCTTACAAATTCCTAGATTGATAGAATCTGAACAGGGCTTTCCTTCACCAACATCTGGACTTATGCCAACATCTAATGGATTGGCTGATCATTCCATGCCTAGAACATCTAATGGATTTCCAAACAATGTCACTGCTACGACAACTAATGGTAATGGTTTAACAGGTCTCTTTCCTCAGAGTCAGAGCATGCCCTCGACCTCGCTGAATGGCAGTATTCTAGACTGTCATGTCTTGCAGCCCTTCGCAGATCCAATGACATTTGGAGATATTAACAATAGTGTCCCTCATATGTGA 1074 0.4767 MEDSTFTPSLNSPQTEQHLASTADINGPSLTVGVQNSAAGGNSEASGLEVGLKRKRGRPRKNDENPPSPNSAPPGFPTSPSSKRGRGRPRGSGKLQTLASMGGIFSATAGGCFIPHVLTVNPGQDVVKNIMSFSPKGHRAFCILSAIGVVKVVEIMQPDSCCRRWVRCEGVFEIVNLSGSHTYGDKNQTNLAMRVLLAKPDGMIFGGAIGGSLIAAGPIQIILGTFKQNINSGIKRLLSPGESSGAAGDAPGNSDGARLSLQIPRLIESEQGFPSPTSGLMPTSNGLADHSMPRTSNGFPNNVTATTTNGNGLTGLFPQSQSMPSTSLNGSILDCHVLQPFADPMTFGDINNSVPHM 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0379 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 258 IPR039605 GO:0003680
Acco08g0379 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 115 227 IPR005175 -
Acco08g0379 357 MobiDBLite consensus disorder prediction 49 63 - -
Acco08g0379 357 MobiDBLite consensus disorder prediction 1 96 - -
Acco08g0379 357 Gene3D - 115 239 - -
Acco08g0379 357 MobiDBLite consensus disorder prediction 270 290 - -
Acco08g0379 357 MobiDBLite consensus disorder prediction 1 43 - -
Acco08g0379 357 PRINTS AT-hook-like domain signature 81 91 IPR017956 GO:0003677
Acco08g0379 357 PRINTS AT-hook-like domain signature 53 63 IPR017956 GO:0003677
Acco08g0379 357 PRINTS AT-hook-like domain signature 65 76 IPR017956 GO:0003677
Acco08g0379 357 ProSiteProfiles PPC domain profile profile. 107 252 IPR005175 -
Acco08g0379 357 SMART AT_hook_2 53 65 IPR017956 GO:0003677
Acco08g0379 357 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Acco08g0379 357 CDD DUF296 115 226 IPR005175 -
Acco08g0379 357 MobiDBLite consensus disorder prediction 271 290 - -
Acco08g0379 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0379 Acco-ChrAcco08 2962377 2964654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0379 49 226 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 43.243 7.23e-36 130