Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0377 ATGGGAGACGCCTTCGTTATCCTGCTTCTCTTCCCTAGGGTTATCTCTACCATTTCGACCAGTTCGATCTTAAGAAGCCCTAGCTCTGTATCTAGGGTGATCTTTGAGTGGCAAGTCTCTGAAATCGCACTTAGTCTGAAGGGTTCTCAGAAGCCTGTCAAATTTGGTTCTGTTTATACTATGGAGGCCCCTGTCGTTAGATCGAGGGGTCGGCCGAGGAAACGGAGGAGAAAAGAGGATGAGAATGGGACGGATGATGGGAGATCGGTTCCCGATTTGAAAAGGCAAGATGTTGGGACAAGGAGACCGATAGCACTGGTTGGACGATATATACTTAAAGAGTTTAAGGGAAACGGGGTCTTTCTGGGAAAAGTTGTGTATTACGAGAGTGGTTTATATAGAGTCAATTACGAGGATGGTGATTATGAGGATTTAGATAGCAGCGAAATTCGTGGAATGCTTCTCAACGACTGTGATCTTGATGATGAGTTTTCTGTAAGGAGGAATAAATTAGATCAATTGGTGTTGAAGTATAGTGCCAAGGAAACATATGGCACGGAGAATAGTTCTGCTGACTTAAACAAAGATGTCCTCAGTCTTGAGGCCCCTGCGTCAAGTGAATTGCCTGGTGGGTCATTGATTGAACCCGACGAGGTAGATGTTGAGGAGGATGCTCATTCATCAAGTGAGGAAAGAGATTCCGCGTCTGATGCTGAGATACCTTCTCTACCTCCTCCACTGCAGTTGCCACCGTCTTCAGGAACTATTGGGGTGCCAGAGCTATATGTCTCTCATCTTCTTGCAGTCTATGGATTTTTACGGTCATTCAGTATTCGCCTGTTTTTAAGTCCGTTTTCTCTGGATGATTTTGTTGGTTCTCTTAACTGCCAAGTTTCAAACACTTTGTTTGATTCCATTCATGTTTCACTGATGCGTGCATTGAGGCGTCATCTTGAAACTCTTTCATCTGAGGGCTCAGAGCATGCATCAAAATGCTTGAGGTGTAATGATTGGGGCTTGCTTGATGCATTGACTTGGCCTGTTTTTGTTATTCAATATCTAGCAATTTATGGATACACAAAGGGACCTGAGTGGAAAGGATTTTATGATGAGATTTTTAATGGTGAATATTATTTATTAGCTGTAAGTAGGAAGTTGACCATACTGCAAATTCTTTGTGATGATGTTTTGGAGTCCGAGGAAATGAAAGCTGAAATGGGCGTTCGTGAAGAATTAGAAGTTGGGATGGAGTATGATGCTCAAGGTATCCTTCCAGAAGAAAACTGGCCTAGATCACATCCAAGAAATGCTAAAATTGCTAGCATGGATAAAGAAGCTAGAAAGTTTAGTTTAGAATCTAATGCTGTGAAGCCACCTGGGAACTGTGTTCTAGATTTCAGAGACAGTAGAAGGACTGAGGATGCTGATGTTGACAGAAATGGAGATGAATGCAGACTCTGTGGAATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCGTCTGCATATCATTCTAGGTGTATTGGAGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATTAATATGAATGGGTTAAGCATTGCACGGGGAACATCACTTAGAGGGGCTGAATTATTTGGAATGGATCTGTATGGACAACTCTTCATGGGTACTTGTGACCACTTACTGGTACTCACTGTCAACAGTGAACTTTGTCTCAGATATTACAACCAGAATGACATCTCAAAAGTTCTCCAAGTGCTTTGCGCTTCAGTAGACCATAGGCCCCTATACTCTGGAATTTGTATGGCTGTGTTACATTATTGGAGTATTCCAGAAAGTATCCTGCCTGTATTTGTTAGAACTGGAACAGACGTTAACAATTTAACTATAGAGGAAGATGCCAAGTTCTCTAGTTTATCAGCGACTCCTTTGAGTGCAAAAGAGCATATATCTATTGATTTAGTGAAGGCAGAACACCCTGCATACAGTGGTATTGTAATTCATGGTGATTACATGGTTCCATCAGACTCGTTGGTTACCACTACCAGAGAGGCCTGTACTTTTGAAAGCAGCAATGACACTAGAACTAGAGAGTGCTTTACTATGAATACTACATTTCCTAAGGAAACTAGAATGGCGTCATTCATCTCTGGTGGTTCTGGTGGCCATCAGTGCAGTCTCTTTGATGTGACCAACAGTCATGGACAAGCAAATGATAATACGTTGCCTTTTACTCCATCCTTGCAACTTAAAGAAGGCAACCTAGCTTTCTTTGGAAAGTTTGAACATAACTCAACTAAGGATTTTACAAACATGGGTTTTTCTTTTAAGCCTCAGTCTTACATGAATCACTATATGCATGGTGATTTTGCTGCATCTGCCGCTGCTAAGTTGGCTATTCTTTCTTCTGAGGACTCTAGGTCAGAGGGTCATGTCTCAGATAATTTGAGGAAATATACAGCTGAAAGTGCTTCCTTGCAAGCCAAAGCATTCTCAATGACAGTTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCCTGTGGAAGTTCCAAGAGAGAGATGTGGCTGGTGCCTTTCTTGTAAAGCCTCAGCGTCAAGCAAGAGAGGCTGCATGCTAAATCATGCAGCCCTGAGTGCCACCAAAATTGCTATAAAAGTTTTAAGTGGTCTTTCCACTGTAAGGAGTGGAGAGGGAAGTCTTCCAAGCATTGCAACATATATCATATATTTGGAGGAAAGCTTACATGGTTTAATAGTTGGGCCTTTTCTAAATGCAAATTACCGAAAACATTGGCGTAAACGAGTTGAACAGGCTAAAACATTTCAAGCTATAAAGCCTCTTTTGCTTGAACTCGAGGAAAACGTTCGCATAATATCTTTTACTGCTGAGTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATCTTTTATTATTCAAGGTGCTTCAAGTTCTGTAGGAACAATACAGACACGTGCAGCAAGTGGAAGGCGCCATAAGAAACAATCAGCTATTGATGAAGTTACAGCTGATTCTCAAGAAAAGAATTTTGACTGGTGGCATGGTGGTAAATCCATGAAAATATTATTTCTAAAAGCAGTTTTGCCAAAATCTGCGGTCAGAAAAGCAGCTCGCCAAGGTGGGTCGAAGAAAATTTCTGGTATTTCCTATGCTGATGGCTTTGAAATCCCTAAAAGAAGCAGACAGTTAGTTTGGAGAGCTGCAGTACAAATGAGTAGGAATGTATCACAGCTCGCACTTCAGGTCAGATACCTTGATTTTCATCTTAGATGGAGTGATCTGATTTGTCCTGAGCAAAATCTCCAGGATGGGAAAGGTCAAGAGACTGAATCTTCCGCGTTTAGAAATGCTAATATCTGTGATAAGAAAGAAGTGGGGGGGAAACTTTTGTATGGAGTTGTTTTTAGGAACCAAAAGCATCTTCCTTCCCGTATAATGAAAAACATTGTTGAAGTTGAGCAAGGTCAGGAAGGAAAGGAGAAGTACTGGTTTTCTGAAGCACGTGTTCCTTTATATTTGGTAAAAGAGTACGAAGAAGGTGTAGAAAAAAAGCTATCTCATCAAGAGAACTTAAAGTTGGAATCTCAGCTGCAAAGAAGGCGGTTGAAAGCTGCTTGCAAGGATATATTTTTTTACCTTACCTGCAAGAGAGACAACTGGGACATATTTTCATGTGCTGTATGTCAGATGGATGTTCTAGCTGGGAATGCTCTCAAGTGCAATGCATGTCAAGGTTATTGCCATGAGGGCTGTTCTATAAGTTCAACCTTCTCTACAAACAAGAAGGTTGAGTTCTTAGCCACATGCAAGCGCTGTTATGCCAAATTGCTTGCTCAAAAAAAAACCAGTGACGAATCTCCAACCAGTCCCTTACTCTTGCAAGGACAAGAACATAGCTCTGTCACTGTTCTGAAGGGACCAAGACCTAAATGTTATGATCAAGCCTTCAAACCTATCAGCATCAAGGAGACTCGGCCTGACATGAAAGAAGGCACTCCTGATTCTGCTCTTGCAACGAAAAACCGTCGCAGGTCTTGTTCTTGGGGTATTATATGGAATAAGAAGAGTGAGGATACAGGCGTTGATTTTAGGCTTAAAAATATACTTCTAAAGGGAGGTATAGGTGCACCTGGATTACAACCTGTTTGTCACTTGTGCCGTAAGCCATATAGGTCTGATCTGATGTATGTCTGCTGTGAGACATGCAAAAATTGGTATCATGCTGATGCTCTTGAACTAGACGAGTCAAAAATTTGTGAAGTGTCGGGCTTCAAATGCTGCAAGTGTCGCAGGATAAAATCTCCAGAGTGTCCTTACTCTGATAAGAAGCCCAAGATACAGGGGAGCACTAAGAAACACCGGAGACCTTCAAAGAAGGATAATTCTAGCACTGACAATTTTGGAGTTATTTCTGAACCAAAACAGTTTGAGCCTGCAACCCCTAACTTTCCTATGGGAGATGATGGAATGAGACGTGACAATGATCCTCTGCTTTACTCTCTTTCAAGTGCTGAGCTGATAACAGACCCTATTGCAGAAGTGAATGCTGTCTCTGATCTGGGGCTTGGGAAACTACCAGTGAGAAGACATGTCAAACGTGAGGGGGATGGTGATGAATCCTTTGGAACTAAACTTTCACAGGTTGAAATTTTAACCCAAAATAGAACATGTAGTCTGTCAGCTGAGGAGAAGGCATCATCTCCTGTGGAATATGACCATGCTGTTTGCTTAGATAGTAATCTGCTGAATGACTGTGGAAATGAAACTTATGAGTTCATGGACTTTGAACCTCATACCTACTTCTCTGTAACAGAATTGCTTCAGCCAGATGATAATCACTTTGAGGGGGCTGATGGATCTGCGGACTTTTCTGGATACTTGGAAAATGTTTCCACTGCAAATATAGATGGCATTCCTGAAGAATCTGGAGCTCTTTGTTTAGTTGATAAACAAGAAGCTGCAGCTTATATACCAGGCAGTGGTTACCATTGTTGCAGATGCTTGCAGATGGAACCAGCTCCTGATCTGTCTTGTGACATTTGTGGGATTTGGATTCACAGCCAATGTTCACCCTGGGTTGAATCACCTTCTAGGTTAGGAAGCTGGAGGTGTGGTAATTGTCGTGAATGGCACTAG 5160 0.4192 MGDAFVILLLFPRVISTISTSSILRSPSSVSRVIFEWQVSEIALSLKGSQKPVKFGSVYTMEAPVVRSRGRPRKRRRKEDENGTDDGRSVPDLKRQDVGTRRPIALVGRYILKEFKGNGVFLGKVVYYESGLYRVNYEDGDYEDLDSSEIRGMLLNDCDLDDEFSVRRNKLDQLVLKYSAKETYGTENSSADLNKDVLSLEAPASSELPGGSLIEPDEVDVEEDAHSSSEERDSASDAEIPSLPPPLQLPPSSGTIGVPELYVSHLLAVYGFLRSFSIRLFLSPFSLDDFVGSLNCQVSNTLFDSIHVSLMRALRRHLETLSSEGSEHASKCLRCNDWGLLDALTWPVFVIQYLAIYGYTKGPEWKGFYDEIFNGEYYLLAVSRKLTILQILCDDVLESEEMKAEMGVREELEVGMEYDAQGILPEENWPRSHPRNAKIASMDKEARKFSLESNAVKPPGNCVLDFRDSRRTEDADVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMNGLSIARGTSLRGAELFGMDLYGQLFMGTCDHLLVLTVNSELCLRYYNQNDISKVLQVLCASVDHRPLYSGICMAVLHYWSIPESILPVFVRTGTDVNNLTIEEDAKFSSLSATPLSAKEHISIDLVKAEHPAYSGIVIHGDYMVPSDSLVTTTREACTFESSNDTRTRECFTMNTTFPKETRMASFISGGSGGHQCSLFDVTNSHGQANDNTLPFTPSLQLKEGNLAFFGKFEHNSTKDFTNMGFSFKPQSYMNHYMHGDFAASAAAKLAILSSEDSRSEGHVSDNLRKYTAESASLQAKAFSMTVSRFFWPSSEKKPVEVPRERCGWCLSCKASASSKRGCMLNHAALSATKIAIKVLSGLSTVRSGEGSLPSIATYIIYLEESLHGLIVGPFLNANYRKHWRKRVEQAKTFQAIKPLLLELEENVRIISFTAEWVKLMDDWLVESFIIQGASSSVGTIQTRAASGRRHKKQSAIDEVTADSQEKNFDWWHGGKSMKILFLKAVLPKSAVRKAARQGGSKKISGISYADGFEIPKRSRQLVWRAAVQMSRNVSQLALQVRYLDFHLRWSDLICPEQNLQDGKGQETESSAFRNANICDKKEVGGKLLYGVVFRNQKHLPSRIMKNIVEVEQGQEGKEKYWFSEARVPLYLVKEYEEGVEKKLSHQENLKLESQLQRRRLKAACKDIFFYLTCKRDNWDIFSCAVCQMDVLAGNALKCNACQGYCHEGCSISSTFSTNKKVEFLATCKRCYAKLLAQKKTSDESPTSPLLLQGQEHSSVTVLKGPRPKCYDQAFKPISIKETRPDMKEGTPDSALATKNRRRSCSWGIIWNKKSEDTGVDFRLKNILLKGGIGAPGLQPVCHLCRKPYRSDLMYVCCETCKNWYHADALELDESKICEVSGFKCCKCRRIKSPECPYSDKKPKIQGSTKKHRRPSKKDNSSTDNFGVISEPKQFEPATPNFPMGDDGMRRDNDPLLYSLSSAELITDPIAEVNAVSDLGLGKLPVRRHVKREGDGDESFGTKLSQVEILTQNRTCSLSAEEKASSPVEYDHAVCLDSNLLNDCGNETYEFMDFEPHTYFSVTELLQPDDNHFEGADGSADFSGYLENVSTANIDGIPEESGALCLVDKQEAAAYIPGSGYHCCRCLQMEPAPDLSCDICGIWIHSQCSPWVESPSRLGSWRCGNCREWH 1719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0377 1719 CDD PHD2_CHD_II 484 525 - -
Acco08g0377 1719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 542 IPR013083 -
Acco08g0377 1719 Pfam DDT domain 263 317 IPR018501 -
Acco08g0377 1719 ProSitePatterns Zinc finger PHD-type signature. 484 525 IPR019786 -
Acco08g0377 1719 ProSiteProfiles DDT domain profile. 260 320 IPR018501 -
Acco08g0377 1719 CDD PHD_SF 1671 1715 - -
Acco08g0377 1719 ProSiteProfiles Zinc finger PHD-type profile. 481 528 IPR019787 -
Acco08g0377 1719 Pfam PHD-finger 484 526 IPR019787 -
Acco08g0377 1719 MobiDBLite consensus disorder prediction 204 249 - -
Acco08g0377 1719 MobiDBLite consensus disorder prediction 1448 1495 - -
Acco08g0377 1719 CDD Tudor_AtPTM-like 107 155 IPR047365 -
Acco08g0377 1719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1384 1454 IPR013083 -
Acco08g0377 1719 SMART PHD_3 1390 1438 IPR001965 -
Acco08g0377 1719 SMART PHD_3 1671 1716 IPR001965 -
Acco08g0377 1719 SMART PHD_3 1232 1281 IPR001965 -
Acco08g0377 1719 SMART PHD_3 483 526 IPR001965 -
Acco08g0377 1719 SUPERFAMILY FYVE/PHD zinc finger 1388 1443 IPR011011 -
Acco08g0377 1719 MobiDBLite consensus disorder prediction 75 94 - -
Acco08g0377 1719 MobiDBLite consensus disorder prediction 66 94 - -
Acco08g0377 1719 CDD PHD_SF 1390 1437 - -
Acco08g0377 1719 SMART testlast3 260 320 IPR018501 -
Acco08g0377 1719 PANTHER PHD FINGER FAMILY PROTEIN 102 1451 - -
Acco08g0377 1719 SUPERFAMILY FYVE/PHD zinc finger 1666 1717 IPR011011 -
Acco08g0377 1719 SUPERFAMILY FYVE/PHD zinc finger 474 530 IPR011011 -
Acco08g0377 1719 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 364 413 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0377 Acco-ChrAcco08 2936673 2943832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0377 350 665 EF-hand Containing Proteins AT5G22760 43.769 8.64e-70 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Acco08g0377 DDT 5.3e-14 No_clan