Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0360 ATGGAACTCTACAACCGGAGACTGCTCCTAGTGAACGAAGATGAGCCCTCCTACTCCGATGCCGCCTCTTCTTCACCACCACGGTTAACGACGGCGCCACTTTCGTCTTCACTGTTCGTAACACCTTTGAAACTATCAGCACCTTTACCCTTTAATTCCAACGTTGCTTACCTCATCATCATCGTCTTCCTCTTAATAGCTTTCATCATTCTGTTCATCCGGAAGTTCACCGGCCACTCCCCTGCATCCGCCCGTCACTCGTCACCGGCGTCATCTAATAATCATTCTCCGTCATCATCGTGCGGTGGTGGTCTCGACCCGACCACCGTCCAATCGTTGCCGGTGTTTCGGTACAACTCAGAAACAAAGCACCAGGACTGCGCCATTTGCCTGAGCGAATTCGAGATCGGCGAGACCGTTAAGATAGTTCCGAACTGTAAGCACGTGTTCCACCGCGAGTGCATCGACATGTGGCTGTCCTCGCACGTGACGTGCCCGGTTTGCCGGGGCAGCAACCTTTTTGAGGAGGAACGGCAGGCAGAAGAGTCGGCTAAGGCGGAGCCGACCGGCGATCAGATTGTTAGACGGCAACAGGTAGCATTAACGGTCGAGAATGGTGACACGTGGCGAGAAGGTAGAACGATGGGAACATTAAGTAATCAGAGACGGAGCCGGAGTTGCCCAAGCTTTAGAGATACAGTACTTTTGCAAAGAACATTAAGCTACTGA 729 0.524 MELYNRRLLLVNEDEPSYSDAASSSPPRLTTAPLSSSLFVTPLKLSAPLPFNSNVAYLIIIVFLLIAFIILFIRKFTGHSPASARHSSPASSNNHSPSSSCGGGLDPTTVQSLPVFRYNSETKHQDCAICLSEFEIGETVKIVPNCKHVFHRECIDMWLSSHVTCPVCRGSNLFEEERQAEESAKAEPTGDQIVRRQQVALTVENGDTWREGRTMGTLSNQRRSRSCPSFRDTVLLQRTLSY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0360 242 CDD RING-H2_EL5-like 126 169 - -
Acco08g0360 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 173 IPR013083 -
Acco08g0360 242 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Acco08g0360 242 SUPERFAMILY RING/U-box 110 173 - -
Acco08g0360 242 FunFam E3 ubiquitin-protein ligase ATL6 93 176 - -
Acco08g0360 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 41 187 - -
Acco08g0360 242 SMART ring_2 127 168 IPR001841 -
Acco08g0360 242 Pfam Ring finger domain 126 169 IPR001841 -
Acco08g0360 242 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0360 Acco-ChrAcco08 2815575 2816303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0360 104 241 C3H Transcription Factor Family AT2G27940 42.143 1.60e-28 106