LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco08g0359	ATGGGGTTCTCTGTTTCTTGTTCTGGAGACCATTTCAAGAACTCTGCCTCTCCGATTGCAGTAAGCCGTATGGCTGATTTCTGCTCAGTTTTCCTGAGCTTGTTCGATCAAAGGCTAAGGGACTCTCATTCTCAATCGTCAAGTAGGCATGTAGATGGAAGCAGGGGAAGCTCTCAGTCATCTTCTTCACTTTTGCAACTATGGCAAGAGATTGAGGATAAGCAAGAGGAGCTAAACAATTCTAGCTGTGAAAACTCTTCTGATCTTGGAGACCCTGAAAGGGAAAGAGTAAGGAAAACTTTCAGAGAATGGATGAACAGTGCTGGTGCTAGAGATGAAGCATCCACGATTTCCATCAGACAAAATAGTCCCAGGGAAGAGTGGCTTGGCGAAACAGAGCAAGAGAGGGTGAGAATCATAAGGGAATGGGTACAAATGAGTAGCCAGAAACAGAGTGGTGTTTCTTCTGGGGACAATAGAGAGGAGCAATCTGAAGAAATTGAACGTGTTCGTAATGGATTTGTGATGAACAAAAATGAAGGACAGAGTGAGCGAACTCGTAGGGGGATTCGGAAATTATGTGGCAGACAGGTTTTGCTTGATATGCTTAACAAGGCTGAGAGAGAAAGGCAGAGAGAAGTTCAGGAGTTGTTAGACCAGAGGGCTGTGTCTCATTTTCCCCATCGCAATCGAATTCAGTCTTTGCTGAGAGGCAGGTTTCTGAGAAATGATAGAGTTGCTGATAAGAAAAGGACCACTTCTGCGTCGGACAGTGAATTAGGCTTATTGAGGCAAAAGCATACTGTATCAGGTTTAAGGGAAGGATTCTTCTCCAGAAAGAACATTTCTGGTTGCAGTTTAGAAAGCAACAATTTACCTGATACCTCATCAAACAGTGACATTGATGAAGCCAGCAGTTCACAAAGTTCCCCAAATGTACATTCCAAACCATCTAAGCCCAATTATCAAGCAACTGATATAACTCAGATATCAGGTGATCACATTTGTCTGCAGAGACCTCCCCGTGAGAAATTAGAATTGCAAGAATCCCCTGCTCCTATCGAAGCAGAGGGACCGCAGGATTTGAAAATTGAATCAAGAGATTTCCAGTCACCAACCAATGTTGGGATCGAAATAGGAGATGATGGCTCTCCACAAAGTGTTCATGTGGTGTCAACTGAAGAAGATACGTCAAAGGAACTTTCCCCATCATGTCTGCCAATTGAAGATACAGAGCATTGCTCTGTGCAGATGTCCAGTGAGGAGGACCATAACGAACAGTCTGATCATGGATATTATTTAGAGGAAAATATCACTGATGAAGATAACTTGAATGAAAATGTTGCTCTGGAAGGAGAGCTTCCCATAGATTTTGGAAATGAGGGAAGTGAAAGGCTTCTACTTGATGCTGAACAGAGAGACAACACTGGGGAAGGTATGGATCTTAATCATCCAACTTCTACATCAAACGAGAGGCCCCAAAACATGTTGCAGAACGAAGATGATGAAGACCCTCATGTTCAAGAACCATCTGAATTGCGGTGGCCACGAGATGATGGCGCTGAAGAACCAATTGAACATTTTTCAGGAGGAGCTTCCGATCATGAAGGCACTGCTACAGTTGGCGGAACTCATGTAATTTATTTTTCTGATGACGACAATGCGCACAGCGGAGAACTCAATGAACTATTAAATAGGAGACGTGTTTCTAATCTCCTTAGCAGCAGTTTTCGTGAGAATCTGGATCAGCTGGTAAGATCATACGTAGAAAGACAGAATCATGCTCAAATGGAGTGGGAGCTGCAAGAGGAGGAGGAGGAAGGCTACCTGGAGCAGCAAGCTATGGATCAGATTGGTGATCAAGATGGTCCTTCTGAAAGCCCCACTTACTTGCCCTCATCACCAACTCAATCTTCTCGACCATTTTGGGACCAACAAAATGACACGAATAATCAACATAACGGAATTGAGTGGGAGATTATTAATGGTTTAAGGGTTGACATGGCTGTGCTACAACAGAGGATGGATGAAATGCAGAGAATGCTGGAAGCGTGCATGGATATGCAGCTTGAGCTGCAGCGTTCATTGAGGCAAGAAGTTTCTGCAGCACTACTTAATTGCTCAGATAATGGGTCCACGACATTCCAAGACCATGATTCCCAAAATGATGATAACTCAAAGTGGGAGTGTGTGAGGAAAGGACTCTGCTGTATATGTTGTGAGAGACATATTGATTCTCTATTGTACAGATGTGGGCACATGTGTACGTGTTCAAAATGTGCAAACGAATTGTTACAGAGCAAGAGAAAGTGCCCAATGTGTCAAGCACCTGTGGTGGAAGTGATACATGCTTATTCCATACTATAA	2367	0.4351	MGFSVSCSGDHFKNSASPIAVSRMADFCSVFLSLFDQRLRDSHSQSSSRHVDGSRGSSQSSSSLLQLWQEIEDKQEELNNSSCENSSDLGDPERERVRKTFREWMNSAGARDEASTISIRQNSPREEWLGETEQERVRIIREWVQMSSQKQSGVSSGDNREEQSEEIERVRNGFVMNKNEGQSERTRRGIRKLCGRQVLLDMLNKAERERQREVQELLDQRAVSHFPHRNRIQSLLRGRFLRNDRVADKKRTTSASDSELGLLRQKHTVSGLREGFFSRKNISGCSLESNNLPDTSSNSDIDEASSSQSSPNVHSKPSKPNYQATDITQISGDHICLQRPPREKLELQESPAPIEAEGPQDLKIESRDFQSPTNVGIEIGDDGSPQSVHVVSTEEDTSKELSPSCLPIEDTEHCSVQMSSEEDHNEQSDHGYYLEENITDEDNLNENVALEGELPIDFGNEGSERLLLDAEQRDNTGEGMDLNHPTSTSNERPQNMLQNEDDEDPHVQEPSELRWPRDDGAEEPIEHFSGGASDHEGTATVGGTHVIYFSDDDNAHSGELNELLNRRRVSNLLSSSFRENLDQLVRSYVERQNHAQMEWELQEEEEEGYLEQQAMDQIGDQDGPSESPTYLPSSPTQSSRPFWDQQNDTNNQHNGIEWEIINGLRVDMAVLQQRMDEMQRMLEACMDMQLELQRSLRQEVSAALLNCSDNGSTTFQDHDSQNDDNSKWECVRKGLCCICCERHIDSLLYRCGHMCTCSKCANELLQSKRKCPMCQAPVVEVIHAYSIL	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	479	495	-	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	474	519	-	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	108	131	-	-
	Acco08g0359	788	Pfam	Zinc finger, C3HC4 type (RING finger)	733	780	-	-
	Acco08g0359	788	ProSiteProfiles	Zinc finger RING-type profile.	736	775	IPR001841	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	287	324	-	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	44	64	-	-
	Acco08g0359	788	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	38	788	-	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	49	64	-	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	618	649	-	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	111	125	-	-
	Acco08g0359	788	Coils	Coil	661	688	-	-
	Acco08g0359	788	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	710	786	IPR013083	-
	Acco08g0359	788	Coils	Coil	196	223	-	-
	Acco08g0359	788	CDD	mRING-HC-C3HC5_NEU1	736	785	-	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	159	173	-	-
	Acco08g0359	788	SUPERFAMILY	RING/U-box	735	781	-	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	496	519	-	-
	Acco08g0359	788	MobiDBLite	consensus disorder prediction	148	187	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco08g0359	Acco-ChrAcco08	2810678	2815394	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco08g0359	711	782	C3H Transcription Factor Family	AT3G06140	36.111	2.78e-06	48.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco01g3717	01	53351555	53355183	Acco08g0359	08	2810678	2815394	CCT
	Acco08g0359	08	2810678	2815394	Acco08g0359	08	2810678	2815394	ECH