Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0338 ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAATGTAAAGAAGGGGCCATGGTCACCAGAAGAAGACACAAAGCTGAAAGAGTACATAGAGAAGAACGGAACAGGGGGTAATTGGATCGCTCTTCCTCAGAAAGCAGGTTTAAAAAGGTGTGGGAAAAGTTGTAGATTGAGGTGGCTCAACTATCTGAGGCCCAACATTAAGCACGGCGAATTCTCTGATGATGAAGACAGAATAATATGCACCCTCTATGCTAATATTGGAAGCAGGTGGTCAATAATAGCAGCTCAGTTGCCAGGGAGGACAGACAATGATATTAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCATGGGTTTGCTTCCTCCATCGTCTAATCACCAGATCAGGAATAAACCTCCTGCAACGTTATTTCATGAATCCTATCATCTTCATAATGATCATCAAAACGCACCTTTTACTTCGTCATGCAGAGACTTAAGCTCTTCTTATTACTACCCCAGCCCATCAACTATATCCTTCACAGGCCTAGAGTCCACTTCTGTTATGCCTTCAACCACCAATAATTTTCCTTATTTTCAAAACCAAGAAGCCTCCTTGGTCAGTCCATCAATGCAACACTACTACAACATATTTGGAAGTGAAGGAAGCTGCAGCACTTCATCAGATGGAAGCTGCAGTCAAATCAGCCGTGGAGGCAGAGGAGACGTCAAACAAGATGAGATGGGTTTTCATCTATTCCATCATCAAAACTTCAACAGCTTCTTGTCCAATGGTAAAGGAGGGTTTGATCATCATCATCATGAGTTGAGCAACAATAACAAGTTCATGCCCGGAGGTGAAACTAGTATTATTAACCAGTGGGCATCGTCAGAGAAGCCAAGTGATCAGTACTTTGGGCAAACCCCATTATTAATGGAGTATGGAATTGAGGAGATAAAGCAGATGATCAGTGGTCATAATAATAATATTGAGGAAAACAAGAGAGAGGAGGGGATGATGTACTACTACTGA 1014 0.4241 MGRAPCCDKANVKKGPWSPEEDTKLKEYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPPSSNHQIRNKPPATLFHESYHLHNDHQNAPFTSSCRDLSSSYYYPSPSTISFTGLESTSVMPSTTNNFPYFQNQEASLVSPSMQHYYNIFGSEGSCSTSSDGSCSQISRGGRGDVKQDEMGFHLFHHQNFNSFLSNGKGGFDHHHHELSNNNKFMPGGETSIINQWASSEKPSDQYFGQTPLLMEYGIEEIKQMISGHNNNIEENKREEGMMYYY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0338 337 CDD SANT 70 111 IPR001005 -
Acco08g0338 337 FunFam Transcription factor RAX3 7 68 - -
Acco08g0338 337 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Acco08g0338 337 Coils Coil 310 330 - -
Acco08g0338 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Acco08g0338 337 SMART sant 13 64 IPR001005 -
Acco08g0338 337 SMART sant 67 115 IPR001005 -
Acco08g0338 337 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Acco08g0338 337 PANTHER OS09G0431300 PROTEIN 1 275 - -
Acco08g0338 337 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Acco08g0338 337 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Acco08g0338 337 CDD SANT 16 62 IPR001005 -
Acco08g0338 337 Gene3D - 69 135 - -
Acco08g0338 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Acco08g0338 337 Gene3D - 7 68 - -
Acco08g0338 337 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0338 Acco-ChrAcco08 2640608 2642036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0338 1 119 MYB Transcription Factor Family AT5G57620 89.076 1.12e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco08g0338 Myb_DNA-binding 8.6e-14 CL0123