Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0289 ATGGGGGAATTGCTATTTGTAATGCTTAAACTAGTTCGGACAGAGGCTTTCAGCATCACTGAATTGAATGCCTCTTTCACAAAAAATGATTTTGGACGATGTGAACGAGCTGTTAGAAATTGGGCATCCTCTTCACTTGACAAGGAAATCGGAGAGGATAAACACAAACTAAGAGATTTGCTATTTTTCCTCCACGTCCCAAGAACAGGAGGACGCACATATTTTCACTGTTTCTTGAAGAAGTTGTATCCCAGCTCTCTTGAGTGCCCTCGTTCTTATGATAAGCTGCGCTTTGATCCAAGCAAACCTAACTGCAGGGTTTTAGTTACACATGATGACTTTAGCATAACTTCAAAACTTCCAAGGGAGAGAACTTCTGTGGTTACCATACTAAGGGATCCTATTAGTCGGGTTTTTAGTACTTATGAATTTTCAATAGAGGTTGCAGCTAGATTTTTGGTGCATCCAAACTTGACATCTATTACTCATATTGCTGGACGCATGCGCTCTAAGACTAAAGGAGTAAGCACACTCAATATCTGGCCCTGGAAGTATCTGGTTCCATGGATGAGGAAAGACCTGTTTGAAAGGAGGGATCTGAGGCAGAGTAGGGGACTACCTACCACTAAGAGCAATGATTCCTATGACTTGGAAGAATATGCAATGCCATTGCATGAATTCATCAATCATCCTGTGGCTGAGGATATTGTTCATAATGGAGCCACATTCCAGGTTGCGGGTTTGACTAACAATTCTTATGTAGCAGAATCACATGAAGTGCGCCATTGTGTACAGAAGTATAAGATTCTTGGCAAGTATGTGCTTCAAGTTGCAAAGGTGATATCACAGCTGAGAGCACCAAATACTAGCATGATTGGTGTTGATAACGCAGGGCATAGCTCACTTTCAAATCCTGAACCTGATAACTATGAACATCAGAATAGTACCTTAGACAGTGGAGCCAGTGAGACTTCTTCCAATGAAGCAACAGAATCAAAAATGACTGTGGGAGACCTCATGGAAGCTTATGAGGACTGTATTTCTAGTTTACGGGAGACCCAGGCTCAACGACGTACCTTTTCTTTGAAGAGAATATCTCCAGTGAACTTTTCAACAGAGGCACGCCTTCAGGTTTCTGATGCAGTTCTTCAGCACATACGATTGCTTAATGACCTTGACTTAGAACTCTATGAATATGCAAGAGAGATTTTCTCCAATCAACACAAAAGTATACTACAGAAATCTATTGAGGTACAATCTCTCCAGGATTCAGGAAAGATGGAAAAACATGTTAAGCATGGCGAACTGGAAGCTCCTTCCTTCAGTGATCACTTCGGTCTTCCTTCTTCTGTTCTTCCTTGTTGTAAATATGAGAAGAAGAATTGTTTTCTGTTTCCTGTAAGAACCTTCTCTGATTTTGCCGGGAGACCGCCTCTGCACACCTGGCAATGCGCTGAAGTTTCCGTTTTAGAGGGTATCAATAACATGAAGGATTCTTGGTTTTTTGACAAGAATTTTAATGGTTTGTCGAATGAAATTTTTGATGATGTCATCAAATATTTTGACTTCCCGCTGGAAGATGTGGAACCTAATGCCATAGATGAAGATTGGGATGCCCAATTCAAACACCTTGAAGAGCCAAATTTTGATGTTCCCTCCGTGTCACCTTCTGGGTTGTGTGATAAGACTCGAAAAGGCAATCCAAAACTTGAGAGGATCTCTACTTCTCGTGCTGAGATTTCCCCAATGGAACAAGTGCCGGAGACTACTAAGGTGACATATATCAAAACCATTCCCAATCCAAGAGTCTCTTCCAACGGCAAGGATATCCTCCGATTCCAAATCTACAGCCCAGTCTCTGTTTTTGAAAGCAGTAGTTCTTCATCAGGTGAGAATGCCTTTGACCAGCCTGCCATCCGAAAGCGAGCTCGCAGCAAACGCCGCCCTCTCTCAAGCCTCACCCCTCTTTTCTCAGTTCCTTTCATCTCTTCCTCACAAGCTCGACAAAAACCTCAAAGGGCAGCTGCTGCCAAATCAAATTTTGAAACACTCCTTACTTGGGATTGGGTACCATGTTATGGTCCCAATGAGAAGCAGCCGAAAAAAGCTCTCTCTGTTCCCTCTAGTCGTATTAATATGAAGAGATCATCATGGCAGCAGTCAATCATCCACAGAAAATGCATGCATTGTCAGGTTACAAAGACCCCTCAGTGGAGGGAGGGTCCTATGGGCCCAAAAACCCTATGCAATGCATGTGGGGTTCGATACCGGTCCGGCCGCCTCTATCCCGAATACCGGCCAGCCACAAGTCCAACTTTTGTAGCATCGTTGCATTCTAACTGTCACAAGAAGGTCTTAGAGTTGAGAAACAGAGCTATCAGTGAAGCTGATGAAGGTTCTATGTTGCCTTTGTCTTCAGAACCTTCAAGAAATTCGGGAGGATAA 2445 0.4307 MGELLFVMLKLVRTEAFSITELNASFTKNDFGRCERAVRNWASSSLDKEIGEDKHKLRDLLFFLHVPRTGGRTYFHCFLKKLYPSSLECPRSYDKLRFDPSKPNCRVLVTHDDFSITSKLPRERTSVVTILRDPISRVFSTYEFSIEVAARFLVHPNLTSITHIAGRMRSKTKGVSTLNIWPWKYLVPWMRKDLFERRDLRQSRGLPTTKSNDSYDLEEYAMPLHEFINHPVAEDIVHNGATFQVAGLTNNSYVAESHEVRHCVQKYKILGKYVLQVAKVISQLRAPNTSMIGVDNAGHSSLSNPEPDNYEHQNSTLDSGASETSSNEATESKMTVGDLMEAYEDCISSLRETQAQRRTFSLKRISPVNFSTEARLQVSDAVLQHIRLLNDLDLELYEYAREIFSNQHKSILQKSIEVQSLQDSGKMEKHVKHGELEAPSFSDHFGLPSSVLPCCKYEKKNCFLFPVRTFSDFAGRPPLHTWQCAEVSVLEGINNMKDSWFFDKNFNGLSNEIFDDVIKYFDFPLEDVEPNAIDEDWDAQFKHLEEPNFDVPSVSPSGLCDKTRKGNPKLERISTSRAEISPMEQVPETTKVTYIKTIPNPRVSSNGKDILRFQIYSPVSVFESSSSSSGENAFDQPAIRKRARSKRRPLSSLTPLFSVPFISSSQARQKPQRAAAAKSNFETLLTWDWVPCYGPNEKQPKKALSVPSSRINMKRSSWQQSIIHRKCMHCQVTKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPATSPTFVASLHSNCHKKVLELRNRAISEADEGSMLPLSSEPSRNSGG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0289 814 PANTHER HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 351 423 IPR010635 GO:0008146|GO:0016020
Acco08g0289 814 ProSitePatterns GATA-type zinc finger domain. 727 752 IPR000679 GO:0006355|GO:0043565
Acco08g0289 814 Gene3D - 56 225 IPR027417 -
Acco08g0289 814 MobiDBLite consensus disorder prediction 295 333 - -
Acco08g0289 814 Gene3D - 722 772 IPR013088 GO:0006355|GO:0008270
Acco08g0289 814 Pfam GATA zinc finger 727 760 IPR000679 GO:0006355|GO:0043565
Acco08g0289 814 FunFam GATA transcription factor 717 800 - -
Acco08g0289 814 MobiDBLite consensus disorder prediction 627 647 - -
Acco08g0289 814 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 720 782 - -
Acco08g0289 814 CDD ZnF_GATA 726 773 IPR000679 GO:0006355|GO:0043565
Acco08g0289 814 SMART GATA_3 721 775 IPR000679 GO:0006355|GO:0043565
Acco08g0289 814 ProSiteProfiles GATA-type zinc finger domain profile. 725 757 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0289 Acco-ChrAcco08 2189666 2202334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0289 503 802 C2C2-Gata Transcription Factor Family AT1G08010 37.097 5.75e-46 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco08g0289 GATA 1.7e-15 CL0167