Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0287 ATGAAGGAAGAAGCTGAGAAAAGCTTGGATCCACAACTATGGCACGCTTGTGCCGGCGGTATGGTTCAGATGCCATCTTTGAACTCCAAAGTTTTCTACTTTCCTCAAGGACACGCCGAGCACGCTCAGGCCGGCGTCGATTTCGCGGCGGCATCCTTGAGGATTCCACCACTCGTTCTCTGCCGCGTGGCAGCCGTGAAATTCCTCGCCGACCCAGAAACCGACGAGGTCTTTGCCAAGTTCAAGTTGATTCCTTTGAGAAACTCCGAGCTAGATGACGCCGACGGCGACGAAAGCACTCACGGCTCTGAGAATTCCGAGAAGCCCGCGTCGTTCGCCAAGACCTTAACTCAGTCCGATGCTAACAATGGTGGAGGCTTCTCTGTTCCGAGATACTGCGCAGAGACCATATTCCCACGGCTCGATTACTCGACTGAGCCGCCGGTTCAAACCGTGATTGCAAAGGACGTCCACGGCGAAATTTGGAAGTTCAGGCATATCTACAGAGGGACACCTCGCCGTCACTTGCTGACAACAGGGTGGAGTACTTTCGTTAACCAGAAGAAACTCGTTGCTGGGGACTCTGTTGTGTTCCTGAGGGCCGAAAATGACGATCTCTGTGTCGGGATTCGCCGTGCTAAGCGTGGGATCGGCGTCGGATCCGACGGCATCTCTGGTTGGAGCTCCGGCGCCGGAGGGAACTGTGTGGGGCCTTATGGGGCTCTCAGTGTGTTGCTCAGAGAAGAAAACAAGCTTCTGCGAAACAATTCAAATGTTGGGAATTCAAATCCTGGGAGAGGCAGAGTGAGACCAGAATCTGTGATGGAAGCTGTAACACTTGCTGCTAACGGTCTTGCATTTGAGGTTGTTTATTACCCAAGAGCAAGTACTCCCGAGTTTTGTGTGAAAGCTGAGGCTATTAAAGCCGCCATGATAATTCAATGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACAGAGGATTCTTCCAGGATTAGCTGGTTCATGGGCACTGTTGCTTCTGTTCAAGTTGTTGATCCTATTCGCTGGCCCAATTCTCCTTGGAGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGTTACAGAATGTGAAGAGGGTAAGTCCATGGTTGGTTGAACTGGTATCGAACCGGCCAGTGATTCCTCTCATGCCGTTCTCTCCTCCTCGGAAGAAGATGCGGCTTCCTCAACACCCTGACTTCCCCTTTGATGGTCCCTTTACGGTACCAACATTTCCCGGTGGCAACCCCCTCGGGCCCAGCAGCCCCTTGTGTTGTCTTTCCGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGAATATCTCTTTCAGATCTCCACCTAAACAATAAGTTGCAGTTGGGGCTGCTTTCAAATAATAACATCCAGCAGCTTGATGTGCATCATCATCATCCTGGGATTTCTGATGGCAACATAATGATGAGCCATGACAAGAAAAATGAGAGCTTGTCATGCTTGCTTACCATGGGAAATTCTAACAAGAGCTTGGAGAAATCTGATAATGTTGTTGTCAAGAGGCACCAGTTTCTGCTTTTTGGACAGCCAATTCTGACTGAGCAACAAATTTCTCAAAGCTGTCATGCTGAAGTGTGGTCTCAGAACTTTTCGCATAAGGATAAGGCAAAGAGCTTCTTTGGTGGATCCCAATCCGTGGTTTCGCAGCCGGGATTGTCTTCTACAACCGACTTCTCTTGGCAACTTGGCTTGGACACGGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGACGTTGGGCGCACTCTAGACCTTTCATGTCTCAGCTCTTACGAAGAACTGTACCGGAAACTGGCTGACATGTTCGGACTTGAAAGATCTGAGATGTTGAGCCGTGTGCTTTACCGAGATGCTTCTGGTGCTGTGAAACGAACTGGAGAAGAACCCTTCAGCGACTTCAAGAAAACGGCAAAAAGATTGACAATTCTGACAGATTCGGGCAGCAAAGATATTAGGAGGGCGTGGATGACAGGATCTCGAAATGGAGATCATGGACTGGATGCATCAAACAAGACAGGCTTTCTGAGCATATTTGCCTAA 2109 0.4964 MKEEAEKSLDPQLWHACAGGMVQMPSLNSKVFYFPQGHAEHAQAGVDFAAASLRIPPLVLCRVAAVKFLADPETDEVFAKFKLIPLRNSELDDADGDESTHGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSTEPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENDDLCVGIRRAKRGIGVGSDGISGWSSGAGGNCVGPYGALSVLLREENKLLRNNSNVGNSNPGRGRVRPESVMEAVTLAANGLAFEVVYYPRASTPEFCVKAEAIKAAMIIQWCSGMRFKMAFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNRPVIPLMPFSPPRKKMRLPQHPDFPFDGPFTVPTFPGGNPLGPSSPLCCLSDNAPAGIQGARHAQFGISLSDLHLNNKLQLGLLSNNNIQQLDVHHHHPGISDGNIMMSHDKKNESLSCLLTMGNSNKSLEKSDNVVVKRHQFLLFGQPILTEQQISQSCHAEVWSQNFSHKDKAKSFFGGSQSVVSQPGLSSTTDFSWQLGLDTGHCKVFLESEDVGRTLDLSCLSSYEELYRKLADMFGLERSEMLSRVLYRDASGAVKRTGEEPFSDFKKTAKRLTILTDSGSKDIRRAWMTGSRNGDHGLDASNKTGFLSIFA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0287 702 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Acco08g0287 702 SUPERFAMILY DNA-binding pseudobarrel domain 106 215 IPR015300 -
Acco08g0287 702 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Acco08g0287 702 FunFam Auxin response factor 110 214 - -
Acco08g0287 702 Gene3D - 315 387 - -
Acco08g0287 702 SMART B3_2 112 214 IPR003340 GO:0003677
Acco08g0287 702 CDD B3_DNA 111 212 IPR003340 GO:0003677
Acco08g0287 702 FunFam Auxin response factor 315 388 - -
Acco08g0287 702 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Acco08g0287 702 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco08g0287 702 Gene3D - 110 214 IPR015300 -
Acco08g0287 702 Gene3D - 589 674 - -
Acco08g0287 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0287 Acco-ChrAcco08 2169287 2172078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0287 1 674 B3 DNA Binding Superfamily AT4G30080 60.844 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco08g0287 B3 3.9e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3773 01 53736498 53739755 Acco08g0287 08 2169287 2172078 CCT