Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0283 ATGGCGATGGCTGTGGTTCCCCATAGAGAAAGCAGCAGTGGGAGCATCAGCAAGCACCTTGATTCCGGTAAGTATGTCCGATACACGGCGGAGCAGATTGAAGCGCTCGAACGCGTTTACGCTGAGTGCCCTAAGCCCAGCTCCTTGCGAAGGCAACAACTGATCCGAGAGTGCCCTATTCTTGCCAACATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGGCAAGGGAATGCTCAGAAGAAGTGTAGAGAGAAGCAGAAAAAGGAGTCAGGGCAGCTTCAGACTGTGAACAGAAAACTGTCTGCGATGAACAAGTTATTGATGGAGGAAAATGAGCGGTTGCAAAAGCAGGTTTCCGAACTAGTATGCGAAAATGGGTTTATGAGGCAGCAATTGCATAGTGCGTCAGCGGCAACTACTGATGCGAGTTCTGATTCGGGGGTCACCACACCTCAGCACTCCTTGAGAGATGCCAATAACCCTGCTGGACTCATATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCGCAAAGTTGCAGTGGAGTGGCGGCTCGAGCGTGTGGTCTTGTTAGTTTAGAACCTACAAAAATTGCGGAGATCCTAAAAGATCGTCCATCTTGGTTTCGGGACTGTCGGAGTCTTGAAGTATTCACAATGTTCCCTGTTGGCAATGGTGGGACAATTGAACTGTTGTACACTCAGACATATGCTCCAACTACATTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATACACTACAAGTTTGGACAATGGAAATCTTGTGGTTTGTGAGAGATCACTGTCTGGTTCAGGTGCTGGTCCTAATGCTGCAGCGGCTGCTCAGTTTGTTAGAGCTGAAATGCTACCCAGTGGCTACCTTATTCGACCATGTGAAGGAGGAGGATCAATCATCCATATTGTTGACCACTTAAATCTCAAGGCATGGAGTGTGCCAGAGGTGCTGAGACCACTTTATGAATCATCAAAAGTGGTTGCTCAGAAAATGACAATTGCAGCACTACGCTATGTCAGGCAAATAGCTCAGGAAACGAGTGGTGAAGTTGTTTATGGTTTAGGTAGGCAGCCTGCTGTTCTGCGAACTTTCAGCCAAAGGCTGAGCAGAGGCTTCAATGACGCTGTCAATGGATTTAATGATCATGGCTGGTCCATAATGAACTGTGATGGTGCTGATGATGTGATTATTGCAGTCAACTCAACCAAGAATCTGAGTGCCACTTCTAATCCTGCAAGTTCCCTAACATTCCTTGGAGGAGTCCTCTGCGCAAGAGCTTCCATGTTGCTCCAGAATGTCCCTCCAGGGGTTTTGGTTCGGTTTCTGAGGGAGCACCGCTCTGAGTGGGCTGATTTCAATGTTGATGCCTATTCTGCTGCATCACTTAAAGCAGGCACAGCCTTTGCCTATCCTGGCATGAGGTCAGCTAGATTCACGGGAAGTCAAATTATCATGCCTCTTGGCCATACAATTGAACATGAAGAGATGCTTGAAATTGTTCGTCTTGAAGGTTTTGCTCAGGAAGACAGTTTTGCATCTAGGGACATTCATCTCTTACAGATATGTAGTGGGATTGATGAAAATGCTGTTGGGGCATGTTCTGAGCTTGTATTTGCTTCAATTGATGAAATGTTCCCTGATGATGCTCCATTGTTGCCCTCGGGTTTCCGCATCATCCCATTGGATTCAAAATCAGGCAATAAGAAGGATGCAATATCTGTAAATCGGACCCTAGAACTGACACCTGATCTTGAAGTGGGCCCAGCAACAAATCATGCTGCAGGAGATGCATCATCATGCCATAATACTCGGTCGGTGCTGACTATTGCCTTTCAGTTTCCTTTTCAGAGCACCTTGCAGGAAAATGTTGCGGTTATGGCACGACAGTATGTACGCAGTGTGATTTCATCTGTGCAGAGGGTTGCCTTGGCTATATCTCCTTCTGGTATAAGCCCACCTGTAGGACCAAAACTCAGTCCTGGCTCTCCTGAAGCAGTCACTCTAGCTCAATGGATATGCCGGAGTCATAGTTTCTATGTGGGAGCGGAATTATTGAGATCAGATACTGTTGTCGGTGATTCTATGCTGAAACATTTATGGCATCATCAGGATGCCATTTTGTGTTGTTCAGTTCGGTCCGTGCCTGTGTTCATCTTTGCAAACCAGGCAGGGCTTGACATGCTGGAAACAACCCTAGTAGCTCTGCAAGATATCACATTGGATAAAATATTTGATGACCCTGGACGCACGGCATTGTATACAGAGTTCGCCAAGTTGATGCAGGAGGGGTTTGCTTATCTGCCTGCTGGAATTTGCATGTCAATGATGGGACGGCATGTTTCGTATGAACAAGCACTTGCATGGAAAGTTCTTGCTGAAGATAGCAGTGTTCATTGCTTGGCATTCTCTTTCATAAATTGGTCATTTGTATGA 2544 0.4686 MAMAVVPHRESSSGSISKHLDSGKYVRYTAEQIEALERVYAECPKPSSLRRQQLIRECPILANIEPKQIKVWFQNRRQGNAQKKCREKQKKESGQLQTVNRKLSAMNKLLMEENERLQKQVSELVCENGFMRQQLHSASAATTDASSDSGVTTPQHSLRDANNPAGLISIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPVGNGGTIELLYTQTYAPTTLAPARDFWTLRYTTSLDNGNLVVCERSLSGSGAGPNAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLKAWSVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDHGWSIMNCDGADDVIIAVNSTKNLSATSNPASSLTFLGGVLCARASMLLQNVPPGVLVRFLREHRSEWADFNVDAYSAASLKAGTAFAYPGMRSARFTGSQIIMPLGHTIEHEEMLEIVRLEGFAQEDSFASRDIHLLQICSGIDENAVGACSELVFASIDEMFPDDAPLLPSGFRIIPLDSKSGNKKDAISVNRTLELTPDLEVGPATNHAAGDASSCHNTRSVLTIAFQFPFQSTLQENVAVMARQYVRSVISSVQRVALAISPSGISPPVGPKLSPGSPEAVTLAQWICRSHSFYVGAELLRSDTVVGDSMLKHLWHHQDAILCCSVRSVPVFIFANQAGLDMLETTLVALQDITLDKIFDDPGRTALYTEFAKLMQEGFAYLPAGICMSMMGRHVSYEQALAWKVLAEDSSVHCLAFSFINWSFV 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0283 847 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Acco08g0283 847 SMART START_1 169 379 IPR002913 GO:0008289
Acco08g0283 847 CDD bZIP 74 122 - -
Acco08g0283 847 SMART HOX_1 21 87 IPR001356 GO:0003677
Acco08g0283 847 SUPERFAMILY Bet v1-like 169 381 - -
Acco08g0283 847 CDD homeodomain 24 78 IPR001356 GO:0003677
Acco08g0283 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 847 IPR044830 GO:0003700
Acco08g0283 847 Pfam START domain 170 378 IPR002913 GO:0008289
Acco08g0283 847 MobiDBLite consensus disorder prediction 137 159 - -
Acco08g0283 847 Pfam Homeodomain 24 78 IPR001356 GO:0003677
Acco08g0283 847 SUPERFAMILY Homeodomain-like 22 79 IPR009057 -
Acco08g0283 847 CDD START_ArGLABRA2_like 164 380 - -
Acco08g0283 847 Coils Coil 96 127 - -
Acco08g0283 847 Gene3D - 204 385 IPR023393 -
Acco08g0283 847 ProSiteProfiles START domain profile. 160 388 IPR002913 GO:0008289
Acco08g0283 847 Pfam MEKHLA domain 704 846 IPR013978 -
Acco08g0283 847 Gene3D - 16 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0283 Acco-ChrAcco08 2133567 2139209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0283 1 847 Homeobox Transcription Factor Family AT5G60690 78.738 0.0 1389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco08g0283 START 3.7e-48 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g0283 08 2133567 2139209 Acco08g0283 08 2133567 2139209 ECH