Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0270 ATGACCATAAAAAGATTCAGCCGCCATATAATATTATTTGCAGCTCACATAAAGTATTATCTAGAGAGTTCAAGCTTGTCCAGATTCCAATCTTCTCAACCCCAAGTTTATGTTAATGACAATACCCCCTTTCAAATAAATTCATCGTTGTATTTGTGCTTTTATAACGAGAATATGAGTACAGAGCAAAAGCCAGTGAGTGAAGGACAAGATGCAGTTTCTTGTCAAAGAACATCTTCTATTCCAGTTCACAAGGTTGATGATCCAATGGGAATAAGTGAAGAGTCCACACATACTCGTCGCTGGAAGAGAGAAAATCTTTCACTACAAATACCCTCAAGAACATCAGAAGAGTCTTTTCAAGATTTTGTAACAATCAAGATACCTCAGACCACAAGTCCTACCCCAACTCCCAAGAGAGTGAATTTTCTGGTGACTTCTCTCGATACCTCCGTTAATAAGTCTCCAGGACCTTCAACTTCAAGAGGAAGACCATCCATAAGAAGTCTCTTACCAAAACTGAACTTTATTTCTCGGCCGTCATCAGACGTTGAAAAAGGTTCTACTGCAGCTTCAGAAGGTTCCTCTTCAGCCACTCGAGAAAAGCCTTCAATCTCAAGAACCTTGTCCCTAACTAAACTATTTACTCCCAGGATTAAGAGGACCTCTTCCTTGCCAGTGGATGAATTTGCACTTTCAAATTCAGAATCTGCTCATGCTGGAACTGTTGGCACTCCTATGGAGAGGAGCTCTGCTCCGAGGCAGATAGTTCGCTCTCTTTCGGTGCCTGTCAACAATAAAGAGAAAAGCTTGAGGAGAATGGATTCATTTTTCCGTATTGTTCCTTCCACCCCACGAGTGAAGGATGGAATTGAATTATCGACGTCATCCCCTTCAAAGCATTCTGAAAACGATGTTGCCGATGGTGAAGATATAGCCGAAGAAGAGGCTGTATGTAGAATTTGTATGATTGACCTATGTGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGGGAACTTGCTCTATCACACCAAGAATGTGCTATTAAGTGGTTTAGCATGAAAGGAAATAAAACATGTGATGTATGCAAGGAGGAGGTTAGGAACTTACCGGTCACTCTTCTGCGGATCCAAAGTGTCCGGGCTCGACATACTGGAGCAAGCAGGTCTCATCTGGACCATGTGAATGATTATAGGGTTTGGCAAGAAGTGCCTGTTCTAGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAACTGGGTACTAATGCAATTGCCATGTCTCTTCCGTTTTCATGCGTATTGGGTCTTCTCTCTTCCATGACATCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATATATGCATCAGCTCAGTTTGCTCTGGTGGTTCTCTTTGCTCATATATTTTACTCCTTGGATATTGCAAAAGATATGCATGTGCAGGCAATACTGTCAATACTTCTTGCAACCTTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGCTCATTTCTTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAGGTTTTATCAGAACAGAATAATAATAATAATGGTGCTCAAGTGATGGCAACTCATCCAGGCTATTCCACAGCCAGGGCAGCACAGAATCACCAAAACTCAAGTCAGATATTGTCACAGGCTGATAATGAGAGTGCTTCTTCATAA 1722 0.4216 MTIKRFSRHIILFAAHIKYYLESSSLSRFQSSQPQVYVNDNTPFQINSSLYLCFYNENMSTEQKPVSEGQDAVSCQRTSSIPVHKVDDPMGISEESTHTRRWKRENLSLQIPSRTSEESFQDFVTIKIPQTTSPTPTPKRVNFLVTSLDTSVNKSPGPSTSRGRPSIRSLLPKLNFISRPSSDVEKGSTAASEGSSSATREKPSISRTLSLTKLFTPRIKRTSSLPVDEFALSNSESAHAGTVGTPMERSSAPRQIVRSLSVPVNNKEKSLRRMDSFFRIVPSTPRVKDGIELSTSSPSKHSENDVADGEDIAEEEAVCRICMIDLCEGGETFKLECSCKGELALSHQECAIKWFSMKGNKTCDVCKEEVRNLPVTLLRIQSVRARHTGASRSHLDHVNDYRVWQEVPVLVIVSMLAYFCFLEQLLVGKLGTNAIAMSLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVLFAHIFYSLDIAKDMHVQAILSILLATFAGFGVVMSGSSFLVEFFRWRRRWQVLSEQNNNNNGAQVMATHPGYSTARAAQNHQNSSQILSQADNESASS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0270 573 CDD RING_CH-C4HC3_MARCH 319 367 - -
Acco08g0270 573 ProSiteProfiles Zinc finger RING-CH-type profile. 311 373 IPR011016 GO:0008270
Acco08g0270 573 Pfam RING-variant domain 319 366 IPR011016 GO:0008270
Acco08g0270 573 SUPERFAMILY RING/U-box 315 370 - -
Acco08g0270 573 MobiDBLite consensus disorder prediction 149 166 - -
Acco08g0270 573 MobiDBLite consensus disorder prediction 149 204 - -
Acco08g0270 573 PANTHER OS02G0165000 PROTEIN 78 535 - -
Acco08g0270 573 MobiDBLite consensus disorder prediction 181 204 - -
Acco08g0270 573 SMART ringv_2 318 367 IPR011016 GO:0008270
Acco08g0270 573 MobiDBLite consensus disorder prediction 289 309 - -
Acco08g0270 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 374 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0270 Acco-ChrAcco08 2020200 2028114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0270 305 373 C3H Transcription Factor Family AT2G37950 41.429 7.15e-13 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3787 01 53796216 53800636 Acco08g0270 08 2020200 2028114 CCT