Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0269 ATGGCGGAAACAGGAAATACTGAACTTTCACTTTCACCCTCTAAAACCCTAAACCATTCTGATCCAATCAATGGTTCTCACTCGCCCCAAGCGCCCGCTGTAAACGCTCAAATCCATCAGGAATCTTCGTCTCCCGCTGCTCAGCCATCGGACGACGTCGTCTCGGGGGAGAAACGGAAGCGAGAAGACTCAGACTCGGGGGTCTCAGATCCTTCCCTCAGCCCCTTGTGGAAAACTAGCCTCTGTTCTTATTTCCGGCGACACGATGGCTCCTGCAGCCACGGGAGTGAGTGCCGCTATGCCCATGGTGAAGAGGAGCTTCGGCCTCGGCCCAATAACACCTGGGACCCAACGTCTGAGCGGGCGAAGAAGGCGATGAAATCCGAGACTGGTGAGAAATGTGCAGTTTCCATGGGTGTAATGATGACTGAGGCTGTGGTCGATGATGCTGATGGCGTGGACAATGATGATTCCAATGACGCTCTTAGCAAATGCTTGGTGCATTTGCCGAGGAAGTGGGTTTCGGACAACTTGAGGGGATTTCTCAGTCAAGAGGGTATACCTTTTAAATCTGCAAAGAAAAAGAAAGGCATGATGGTAGGATTTGTCACTTTTGAAGATCAGGAACAGTTGAAGAGCTCAACAAAGGAGCTGGAAGGCAAATTCATTGGCAGCAAAAGTTTAAAAGTTGCAGATGTCATTCCTCGATCTTTTGAAAAGAAATCAAATGTTACTCTTTGTGCAGAATCTGCACAAAATGGTGAGAATGCAGATAGTGAGACAGATGGTGCAAATTTGGTGGTTGGTGATTCCGTGCTGAAGACAAGAAGCCTCCGAGGCGTAGTGACTCCTCTTGCTCATATGGCCTATGCTGATCAGTTAGAGCACAAAAAAGGCTCTCTCACACAGATCCTCAAAAAACTTACTAGAAATGCTCGTAAAGCTTGTCCAAGTGGCATTTCTCTTCCTGAGTGGATTCTCAAGTCTAGGGACATAGGTGGCCTTCCTTGCAAACTAGAAGGTATTATTGGATCACCAACAGTAAATGGATATCGCAACAAGTGTGAATTTTCTGTTGGATATTCTGTAGAAGGAAAAATAACTGTAGGATTCATGCTAGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGGGGACTGCCCAAATGTTTCAACAATTGCTCTCCAGTATGCTTCTATCTTTCAGGAATTTCTGCAGCAGTCACAGTTACCAGTCTGGAACAGATTTAAGAACAGCGGGTTTTGGCGTCAATTGACAGTTCGAGAAGGAAGGACAAATGGGAAGGTTGCTGATGCTGAAGATTTTGGTGGTATTGCAGAGGTCATGCTTATTGTTCAGGTTTCTACAAAGGGCTTTGATAATGAGATAGTAACCGGTGAATTTGAGAAACTTGCTCAAGCATTTGTTGCAGGAGCTAATGCATGTTCTCCATCATTGCCTCTCACGGCTCTGGTTGTACAGGATCACCAAGGAATATCCAATGTAGCACCAGCTGATGCTCCCCTGCAATCACTTCTCACTCCTAAAGGAGTTGGTGGTCAAATAAGTGAAAATGATGCTATGGATGTTAGGATCCATGATCGCATCAGCAATCTCAAGTTTTCTATATCTCCGACTGCATTTTTTCAGGTCAACACTCTAGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGAAGCGTTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACCTTAGCACATCGTGTTGGTATGGTGATTGGTGTTGAAATGAATGCTTCTGCAGTATCTGATGCTCAAAGGAACGCTGAGGTTAACGGTATAAAGAATTGTAGATTTATATGTGCAAAGGCCGAGGATGTGATGGGATCTTTATTAAAGGAGCACCTAAATAAGCCTAAAGAACAAGTTAATGGTCCTAGTATCTGTGGAACTGATGTTGAGGAAATCTCCGAGGGGAGTACATGCCCTGAAACTGAAAATGGTGAACTAGAATCTCAGTGTTCTGAAAATGGCAGGCAAGAAGATGAAATTGAGGCTCAGAGAGGGAGCGATTGTGAAAATGGAAATTCTTTGATGCAACAATTTAAAAATGTTGTTGCTATTGTTGACCCTCCACGTGCTGGACTCCATCCAACTGTGATCAAAGCTTTGAGGACTAATCAAGGACTGCGGAGGCTTGTCTACATATCCTGTAATCCTGAGAGTTTGGTGGCAAATGCTATTGAACTTTGCACTCCATCTCCTGCGAAAATGGAAAAAGGAAATAAAGATAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTTGCAAGACACAGAGCCAAGTCTATGCCTATCTCAGAGGCCTTCCAACCCATAAAAGCCATGGCCGTTGATCTATTCCCACATACTGAACACTGTGAACTGGTGATGCTCCTCGAGAGGTAG 2466 0.4513 MAETGNTELSLSPSKTLNHSDPINGSHSPQAPAVNAQIHQESSSPAAQPSDDVVSGEKRKREDSDSGVSDPSLSPLWKTSLCSYFRRHDGSCSHGSECRYAHGEEELRPRPNNTWDPTSERAKKAMKSETGEKCAVSMGVMMTEAVVDDADGVDNDDSNDALSKCLVHLPRKWVSDNLRGFLSQEGIPFKSAKKKKGMMVGFVTFEDQEQLKSSTKELEGKFIGSKSLKVADVIPRSFEKKSNVTLCAESAQNGENADSETDGANLVVGDSVLKTRSLRGVVTPLAHMAYADQLEHKKGSLTQILKKLTRNARKACPSGISLPEWILKSRDIGGLPCKLEGIIGSPTVNGYRNKCEFSVGYSVEGKITVGFMLGNFREGVTAVEEAGDCPNVSTIALQYASIFQEFLQQSQLPVWNRFKNSGFWRQLTVREGRTNGKVADAEDFGGIAEVMLIVQVSTKGFDNEIVTGEFEKLAQAFVAGANACSPSLPLTALVVQDHQGISNVAPADAPLQSLLTPKGVGGQISENDAMDVRIHDRISNLKFSISPTAFFQVNTLAAEKLYSLAGDWACLGPEALLFDICCGTGTIGLTLAHRVGMVIGVEMNASAVSDAQRNAEVNGIKNCRFICAKAEDVMGSLLKEHLNKPKEQVNGPSICGTDVEEISEGSTCPETENGELESQCSENGRQEDEIEAQRGSDCENGNSLMQQFKNVVAIVDPPRAGLHPTVIKALRTNQGLRRLVYISCNPESLVANAIELCTPSPAKMEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTEHCELVMLLER 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0269 821 SMART c3hfinal6 76 104 IPR000571 GO:0046872
Acco08g0269 821 MobiDBLite consensus disorder prediction 681 695 - -
Acco08g0269 821 MobiDBLite consensus disorder prediction 53 67 - -
Acco08g0269 821 MobiDBLite consensus disorder prediction 663 696 - -
Acco08g0269 821 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 281 821 IPR010280 GO:0006396|GO:0008173
Acco08g0269 821 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 283 821 IPR029063 -
Acco08g0269 821 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 94 821 IPR045850 -
Acco08g0269 821 CDD AdoMet_MTases 579 633 - -
Acco08g0269 821 Coils Coil 291 311 - -
Acco08g0269 821 ProSitePatterns RNA methyltransferase trmA family signature 1. 716 748 IPR030390 -
Acco08g0269 821 Gene3D - 157 242 IPR012677 -
Acco08g0269 821 Pfam Methyltransferase domain 578 636 IPR025714 -
Acco08g0269 821 SUPERFAMILY CCCH zinc finger 75 109 IPR036855 GO:0046872
Acco08g0269 821 Gene3D - 70 110 - -
Acco08g0269 821 ProSiteProfiles Zinc finger C3H1-type profile. 76 105 IPR000571 GO:0046872
Acco08g0269 821 Gene3D Vaccinia Virus protein VP39 522 820 IPR029063 -
Acco08g0269 821 Pfam tRNA (Uracil-5-)-methyltransferase 706 756 IPR010280 GO:0006396|GO:0008173
Acco08g0269 821 MobiDBLite consensus disorder prediction 1 50 - -
Acco08g0269 821 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 104 IPR000571 GO:0046872
Acco08g0269 821 MobiDBLite consensus disorder prediction 109 131 - -
Acco08g0269 821 MobiDBLite consensus disorder prediction 664 680 - -
Acco08g0269 821 MobiDBLite consensus disorder prediction 1 72 - -
Acco08g0269 821 SUPERFAMILY RNA-binding domain, RBD 168 237 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0269 Acco-ChrAcco08 2014836 2020014 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco08g0269 tRNA_U5-meth_tr 2.5e-07 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g0269 08 2014836 2020014 Acco08g0269 08 2014836 2020014 ECH