Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0261 ATGGCTTCTTCCAAAAATTCCAAGACAGAACACGAGAGCGAACCTGCTGACAGTTCCAAACCAGCGAACAAAGCCGCTAAACCCAGAAAAGAGAAGCACCTGGACAAGAAAAACAAGAGTATTAAGAAGAAAAAACTTAACAATCTTGATGCGAATAAGGACGATAAAGCGATCGTTGTTCCTTCTTCCAGTACCGAGTCACATGAAAAATTCGAAGAGGAAGAGCGTCTGGAAGACAAGACTGAGATCACAAATGGCCGAACCAGTGCAATTAAACCCAAAAAAGACAAAGTCAAAGGAATTAAATATGATGACGACGATGAAGCTGAAGGCAAAGGAGACGCCAAAGGCAATGTATTTCCCATGAATCGTATCCGGACGATAATTAGGGGCCAAGATCTTGAATTTCGTGTTTCCCAGGAAGCCATATTTGCCATCAACAAAGCCACGGAGATGTTCCTTGAACAATTTACGCGGGACAGTCATGCTACCTGTGTTCGAGATCGGAAAAAATCTCTGGCTTACAAACACCTTTCATCTGTTGTAAGTAAGCAGAGCAGATTTGACTTTCTATCAGATTTTGTTCCGGAGAAAATAAAAGCAGAGGATGCATTAAGGGAGAGAAATTCCAGTGTAAATGGTGTGACTAGGTCAAGGTGTACTGGTGATCATAATATGATGGGTAGTGTAGATGTATATTTCATCGATGGCGAAGTTTATTTGCACGACCGCTGCTGCAATAGAGAATGTGGAAAGGTGGAAGTCCAAGAGAGAGTGTCAATTTCGTTTCAGTTCGTGTATCCTACATCTGATGATATCACTCCATTGTTGACGATAATCACCACCATAATGAAGCTCCTCTCACTTATTCTGCTTGCTCTGTTTCTTTCCACGTCTTCGGCTCAGTCGCCTGCAGCGGCTCCGGCTCCTACCCCGTCAACGCCTCCCACAGACATCATCAGAATCCTCAACAAGGCTGGAGGATTCACCACTCTGATCCGTCTTCTCAAGACGACCCAAGTGGCTAACCAAATCAACTCACAGCTATTGACTTCAAGTGGTGGCATCACATTTTTCGCCCCCACCGACAATGCATTCACCAGCCTCAAACCTGGATTCCTCAATTCCCTCAACGACCAGCAGAAGAATGAGCTCGTTCAGTTCCACATATTGCCTACATTGGTCTCCCTATCAAATTTTGACACTTTGAGCAACCCGGTGCGAACGCAGGCCGGGGCGGATCCGGATCGGTTGGCCCTCAATGTCACGGGTTCCGGCAACCAAGTCAACATGACGACCGGCGTTGTCAATGCCACCGTTGGTGGGACCGTGTATACAGATAGCCAGCTAGCGGTTTACCAAGTGGACAAGGTGCTTCTTCCCCGGGATTTCTTCGAGGCCAAGGCTCCGGCACCGGCGCCGGCACCTGCATCGGCCAAGACGAAATCCTCAAAGAAGAAAGCGGCTGAGGGACCTGCGTCTCCTGCGGATGACTCTGCGGCGATGAGCGTGAAACAGATGTGGGGGGCCATTGTTGGGGCTACAGTGATGGGATTATGGTTGTGA 1566 0.4777 MASSKNSKTEHESEPADSSKPANKAAKPRKEKHLDKKNKSIKKKKLNNLDANKDDKAIVVPSSSTESHEKFEEEERLEDKTEITNGRTSAIKPKKDKVKGIKYDDDDEAEGKGDAKGNVFPMNRIRTIIRGQDLEFRVSQEAIFAINKATEMFLEQFTRDSHATCVRDRKKSLAYKHLSSVVSKQSRFDFLSDFVPEKIKAEDALRERNSSVNGVTRSRCTGDHNMMGSVDVYFIDGEVYLHDRCCNRECGKVEVQERVSISFQFVYPTSDDITPLLTIITTIMKLLSLILLALFLSTSSAQSPAAAPAPTPSTPPTDIIRILNKAGGFTTLIRLLKTTQVANQINSQLLTSSGGITFFAPTDNAFTSLKPGFLNSLNDQQKNELVQFHILPTLVSLSNFDTLSNPVRTQAGADPDRLALNVTGSGNQVNMTTGVVNATVGGTVYTDSQLAVYQVDKVLLPRDFFEAKAPAPAPAPASAKTKSSKKKAAEGPASPADDSAAMSVKQMWGAIVGATVMGLWL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0261 521 Pfam Fasciclin domain 328 461 IPR000782 -
Acco08g0261 521 SUPERFAMILY Histone-fold 137 198 IPR009072 GO:0046982
Acco08g0261 521 MobiDBLite consensus disorder prediction 1 81 - -
Acco08g0261 521 SMART fasc_3 357 462 IPR000782 -
Acco08g0261 521 MobiDBLite consensus disorder prediction 7 29 - -
Acco08g0261 521 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 286 507 IPR045003 -
Acco08g0261 521 SUPERFAMILY FAS1 domain 306 462 IPR036378 -
Acco08g0261 521 FunFam Fasciclin-like arabinogalactan protein 11 296 461 - -
Acco08g0261 521 MobiDBLite consensus disorder prediction 469 500 - -
Acco08g0261 521 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 120 182 IPR003958 -
Acco08g0261 521 Gene3D FAS1 domain 296 462 IPR036378 -
Acco08g0261 521 ProSiteProfiles FAS1/BIgH3 domain profile. 316 459 IPR000782 -
Acco08g0261 521 Gene3D Histone, subunit A 71 197 IPR009072 GO:0046982
Acco08g0261 521 MobiDBLite consensus disorder prediction 66 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0261 Acco-ChrAcco08 1948904 1954409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0261 85 178 CCAAT-HAP5 Transcription Factor Family AT1G07980 43.617 1.54e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Acco08g0261 Fasciclin 4.6e-21 No_clan