Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0255 ATGTCTGAACAAGGCCTCTCTCTTCCTTCCACCATCAAAACCTTCCTTCCTAACCCTACTCCTCCCAAGAAGAAGAGACATCTCCCCGGAACACCAGGCAAGTATATATATATATATTCTTCTGCCTCTCTAGTATACTCTCCCATCAAGTTTTTTCAATCAACGCACTCTATTATATTCCTCAAAATTGAATATTCAGATCCAGATGCACAAGTAATAGCGCTATCGCCCAAATCCTTGATGGCCACGAACCGATTCGTGTGCGAAATCTGCAAAAAGGGGTTTCAGAGAGACCAGAATCTGCAGCTGCACCGTCGTGGGCACAACCTTCCCTGGAAGCTCCGGCAAAGGAGTGGCGGCAAAGAAGCAGCAGCCAAAAAAGTGTACGTGTGCCCTGAAAAGACGTGCGTCCACCATGATCCTTCCAGAGCCCTCGGTGACCTATCCGGTATCAAGAAGCACTTCTGCAGAAAACATGGTGACAAGAAGTGGAACTGCCCCAAATGCTCCAAGAAATACGCCGTTCACTCTGATTGGAAGGCTCATCTCAAGACTTGTGGCACTAGAGAGTACAAATGTCGCTGTGGCACCCTTTTCTCCAGGAAAGACAGCTTCATGACGCATAGAGCTTTCTGTGATGTCTTGGCGGAAGAAAGTTCCCGAATAAGCTTGGTCCCTGAAGCATCTAGAACCCCTCAGATTTTTACTGGCTATTATCCTCCAGTGCCTGATTTGATGCAAAGCATGAACATGCTTGCAACTTCGTCGTCTTCTTCCTCGTGGCTAAAACCATACCCAGAAGCATCATTCGAGAGTTTAGCCAATCTGGCCGTGTCCGGGGTACCTCGCCTGCTAAAGGAGGAGGAAGAAGAAGAGAACAAAGGAGCGTTGTCGTATAGCGCAAGCTCTTTGTATTATAGTAGTAATTATCAAAACCCATCATCGCAAGTAGGTTTGTCTCAGCCTCATCACATGTCATCATCACCCACTTCACTGTTACAAAAAGTAAACCAGATGGGATCTACGGTAGGAAGCAACCATATCAACATTTTTGGGTTGATGAGTGAATCCTTACCGTTCATCGCCAACAGCACTGCCACAACGTTTAGATATGGAACTGATCATCAAAACTTCAACGACTTGGCGGTGATCTCACAAGGATTGTTGTTGAATGATTTGAACTCGAGCCACTCTGTGAGAAGCGGCCAAAATTTAGATAAAATGGAATTGGGTGGTTTAACCAGAGATTTTCTAGGCGTTGCTGAAAAAGAGTTGGTCAAGTTTAATGTAATAGGCTCCACTGCTCAGCCATGA 1314 0.4581 MSEQGLSLPSTIKTFLPNPTPPKKKRHLPGTPGKYIYIYSSASLVYSPIKFFQSTHSIIFLKIEYSDPDAQVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRSGGKEAAAKKVYVCPEKTCVHHDPSRALGDLSGIKKHFCRKHGDKKWNCPKCSKKYAVHSDWKAHLKTCGTREYKCRCGTLFSRKDSFMTHRAFCDVLAEESSRISLVPEASRTPQIFTGYYPPVPDLMQSMNMLATSSSSSSWLKPYPEASFESLANLAVSGVPRLLKEEEEEENKGALSYSASSLYYSSNYQNPSSQVGLSQPHHMSSSPTSLLQKVNQMGSTVGSNHINIFGLMSESLPFIANSTATTFRYGTDHQNFNDLAVISQGLLLNDLNSSHSVRSGQNLDKMELGGLTRDFLGVAEKELVKFNVIGSTAQP 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0255 437 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Acco08g0255 437 Gene3D Classic Zinc Finger 121 212 - -
Acco08g0255 437 SUPERFAMILY beta-beta-alpha zinc fingers 85 184 IPR036236 -
Acco08g0255 437 SMART c2h2final6 86 108 IPR013087 -
Acco08g0255 437 SMART c2h2final6 164 184 IPR013087 -
Acco08g0255 437 SMART c2h2final6 129 159 IPR013087 -
Acco08g0255 437 MobiDBLite consensus disorder prediction 1 28 - -
Acco08g0255 437 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Acco08g0255 437 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 421 IPR031140 -
Acco08g0255 437 FunFam protein indeterminate-domain 12-like 65 135 - -
Acco08g0255 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Acco08g0255 437 Gene3D Classic Zinc Finger 82 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0255 Acco-ChrAcco08 1916400 1917916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0255 16 236 IDZ Gene Family AT3G50700 63.348 2.96e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco08g0255 None None None