Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0254 ATGGAGGAGGACCAAGTAGTGCGCTTTAAGAACACATTTCCACGTGGTTTTAAGTTCCATCCATCTGATGAGGAACTCATAGTTCATTACTTGAAGAAGAAGATCAACTCTCTTCCACTTCCAGCACCTATTGTTGCTGAAATCGAGCTTTATAAGTTTAACCCATGGGACCTACCTGATAAGGCCTTGTTTGGAGAGGATGAGTGGTATTTCTTCAGCCCAAGAGACAGGAAATATCCAAATGGGTTAAGGCCAAACAGGGCTACACCTTCTGGGTATTGGAAGGCGACAGGAACCGACAAGCCAGTTCTGAATCGGTGTGGATCAAAGCTGATAGGAGTGAGGAAAGCTTTGGTTTTCTATTCAGGTCGTCCTCCTAAAGGCACTAAGACTGATTGGATCATGAATGAATATAGATTGGTTGACAACACAACCAGAAAACCTTTTAGGTTCAGAGGTTCCATGCGATTGGATGATTGGGTACTATGTCGGGTTCGATATAAAGACTACTCATCAAATCATAAAGGAGGTGAGATTCAAGAGAATCAGTGTGCCTCAAAATTGAACCTACCAACCATCACAGATTATCATCAAATGTTAGCTTCTGTGGTTCTTGGCGATGAACCTAATAAGCTTTCCTGTGACAACATGACTGGAATGAACTTTAGAAGCAGCAAAGGCAACAGTTTCAGTTCAGTGAGTCCTCAGATGACAACAATTCCGTCGTTGGACAACTTCAGTTGCTTGGATTCGCTGAAAAGAATGTCTAATGAAGATAGTCAAGTTGGATCAAATCTCATTTCTTTTAACAGTAGCAAGCCAAACCCTGAGAATTACAAGATTGATAATGTTACAGATACAAACTGCTATAGCCAAAGTGTGTGTAAAGAGGGATCTCTTGGACTGAGAATAGTAGATTCCAGCATCCATTTTCAAGAACTGAATGAGCTACCCTTTACAGGAAGGTTCATGCAATGGAGAAATGATTAG 990 0.4131 MEEDQVVRFKNTFPRGFKFHPSDEELIVHYLKKKINSLPLPAPIVAEIELYKFNPWDLPDKALFGEDEWYFFSPRDRKYPNGLRPNRATPSGYWKATGTDKPVLNRCGSKLIGVRKALVFYSGRPPKGTKTDWIMNEYRLVDNTTRKPFRFRGSMRLDDWVLCRVRYKDYSSNHKGGEIQENQCASKLNLPTITDYHQMLASVVLGDEPNKLSCDNMTGMNFRSSKGNSFSSVSPQMTTIPSLDNFSCLDSLKRMSNEDSQVGSNLISFNSSKPNPENYKIDNVTDTNCYSQSVCKEGSLGLRIVDSSIHFQELNELPFTGRFMQWRND 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0254 329 Gene3D NAC domain 22 172 IPR036093 GO:0003677|GO:0006355
Acco08g0254 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 247 - -
Acco08g0254 329 SUPERFAMILY NAC domain 10 168 IPR036093 GO:0003677|GO:0006355
Acco08g0254 329 ProSiteProfiles NAC domain profile. 13 168 IPR003441 GO:0003677|GO:0006355
Acco08g0254 329 FunFam NAC domain-containing protein 72-like 22 173 - -
Acco08g0254 329 Pfam No apical meristem (NAM) protein 14 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0254 Acco-ChrAcco08 1906220 1907779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0254 13 171 NAC Transcription Factor Family AT1G61110 66.867 4.36e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco08g0254 NAM 6.3e-36 No_clan